When using easy-cluster with default settings, a warning appears after the first createdb command:

Shuffle database cannot be combined with –-createdb-mode 0
We recompute with –-shuffle 0

However, the createdb command before this warning shows:

createdb uniprot.fasta output/tmp/16262857430256586626/input -–dbtype 0 –-shuffle 1 –-createdb-mode 1 –-write-lookup 0 –-id-offset 0 –-compressed 0 -v 3

This is confusing because:

• If this is the command that caused the warning, then createdb-mode should be 0 (since the warning says shuffle cannot be used with createdb-mode 0).
• If this is the corrected command after the warning, then shuffle should be 0 (since the warning says it was recomputed with shuffle 0).

It seems like there is either a mistake in the warning message or a bug in the program.