Marie Curie Proposal Example
Marie Curie Proposal Example
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Erick Perera
Instituto de Ciencias Marinas de Andalucía
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Some of the authors of this publication are also working on these related projects:
Carbohydrate digestion in the spiny lobster Panulirus argus (Latreille, 1804): digestive amylases and their relationship to metabolism and growth. View project
All content following this page was uploaded by Erick Perera on 09 July 2015.
After achieving a Ph. D. degree, a highly competitive race starts for young scientists
with the ultimate goal of getting a position in academia or industry. This transition to
principal investigator or equivalent position is essential for further career development,
as allow personal stability and the possibility to develop own ideas. During this period,
researchers usually are engaged in, hopefully not to many, post-docs. Post-docs enlarge
the researches laboratory, management, and teaching skills, and allow them to build a
publication record and international reputation. Probably most important, these periods
often serve for researchers to draft a long-term strategy in science.
While today this is relatively less important in US (i.e., transit through many different
post-docs before a position), it is still a critical issue in Europe. The European
Commission offers different possibilities for post-docs but they are highly competitive.
It is not enough to submit a proposal of good science, but also to state it clearly by
taking into account the priorities of the European Commission, and more difficult, by
foreseeing the thinking philosophy of the evaluators.
Here I’m uploading my winning Marie Curie IIF application for helping young
scientists worldwide, especially those from the biological sciences, in preparing their
applications to European Union research calls. I hope they find this document useful
and be smart enough to take advice of my good movements and avoid my pitfalls.
I share this project proposal just as an example, and applicants must be aware of the
very complete and detailed Guide for Applicants that the European Commission
provides, containing all the essential information for guiding the researchers through the
processes of preparing and submitting a proposal.
Good luck!
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Breaking frontiers for the use of plant-derived feeds in fish farming through nutritional programming of fish
Proposal Title larvae
Sustainable expansion of European fish farming is dependent on feeds relying less on fishmeal. European researches and industry
initiatives over the last decade have resulted in a significantly decrease in the share of fishmeal in fish feeds, but current replacement rates
seem to be close to the physiological capacity of the different species. This project will use one of the most important cultured fish in
Europe (Sparus aurata) as animal model, to look for a novel strategy for increasing the use of soybean meal in aquafeeds, addressing a
key question in today nutrition research: can early diet influences long-term outcome? Hence, the main objective is to assess if early
manipulations in fish larva can encourage a better use of plant proteins in later life. This issue (nutritional programming, in its wider sense)
has been poorly studied in animals other than humans and mammalian models. The project will focus at four different levels: epigenetic
programming, compensatory responses, microbiota changes, and growth outcome produced by early exposure to plant proteins and
pro/prebiotics. The multidisciplinary nature of the project is strong, involving a combination of well developed biochemistry, molecular
biology, microbiology and aquaculture. This proposal includes both the transfer of knowledge to the host institution and the training of the
candidate in new advanced techniques. Results have the potential capacity to increase the competitiveness of the Mediterranean
aquaculture and provide room for further studies at the fundamental and applied levels in S. aurata, and other European cultured fishes.
This project is in line with the EU strategy for the sustainable development of aquaculture.
IF YES
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Legal address
Calle Serrano
Street name Number 117
Country ES
Certain types of organisations benefit from special conditions under the FP7 participation rules.
The Commission also collects data for statistical purposes.
International organisation no
Commercial Enterprise no
73.1
Page 2 out of 3
Av.Republica Saharaui
Street name Number 2
Phone 2 +34 956 832612 ext.334 Fax +34 956 834701 E-mail manuel.yufera@icman.csic.es
Page 3 out of 3
Av.Republica Saharaui
Street name Number 2
Contact address
DStrampes
Street Name Number 168
e-mail erickpbcim@yahoo.es
Qualifications
Have you submitted or are you in the process of submitting another proposal
for the Marie Curie Actions: IEF, IOF, IIF or CIG, or have you no
previously benefited of Community funding under Marie Curie actions ?
If Yes:
- -
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Page 1 out of 1
FUNDING REQUEST
2013 9 no 0 no
2014 12 no 0 no
2015 3 no 0 no
24 0
Total
Mobility allowance
Post-graduate Research Experience of the applicant at the deadline of the call > 10 years
STARTPAGE
PEOPLE
MARIE CURIE ACTIONS
Call: FP7-PEOPLE-2012-IIF
PART B
“FishPROG”
FishPROG
Table of Contents
Part B - Page 2 / 24
FishPROG
B 1.1. Research and technological quality, including any interdisciplinary and multidisciplinary
aspects of the proposal
World aquaculture, especially for carnivorous species, relies on fish meal as main protein source in feed.
Since current world production of fish meal is not expected to increase, expansion of aquaculture production
will require lowering the inclusion rate of fish meal in aquafeeds, otherwise resulting in a shortage of marine
raw materials. Also, fish meal has become extremely expensive as aquaculture production has grown,
impacting the competitiveness of the industry. There are also serious concerns on the detrimental effect of
fish meal use on environment, since the preservation of the quality of aquatic environment is of primary
importance in the European Union. European researches and industry initiatives over the last decade have
resulted in a significantly decrease in the share of fishmeal in fish feeds, but main fish species farmed in
Europe are still largely fed fishmeal. This project will use one of the most important cultured fish in Europe
(Sparus aurata) as animal model, to look for innovative strategies for increasing the use of plant meals in
aquafeeds without impacting fish performance and wellbeing, by applying the novel concept of nutritional
programming in fish larvae.
Impressive advances have been obtained during the last two decades in the nutrition of this fish species, and
recent results prospect the increase of protein digestion by taking advance of digestive rhythms (Montoya et
al., 2010) or pH in the gastrointestinal tract (Márquez et al., 2011; Nikolopoulou et al., 2011). However,
current replacement rates of fish meal in diet by plant proteins seem to be close to the physiological capacity
of this and other species. In Atlantic salmon (Salmo salar), the normal morphology of the distal intestine is
disrupted by soybean diets (van den Ingh et al., 1996). These changes have also been observed in S. aurata
(Santigosa et al., 2008) along with modification of nutrient absorption (Santigosa et al., 2011), and fat
deposition in the liver (Robaina et al., 1995). It seems that S. aurata decreases the level of brush border
membrane enzymes (i.e. phosphatase) during plant diets feeding (Silva et al., 2010), while lipoprotein lipase
is up-regulated (Saera-Vila et al., 2005), but advancing to higher rates of fish meal replacement will require a
deeper understanding of its digestive plasticity.
The present proposal relates with a novel approach in fish nutrition by addressing a key question in today
nutrition research: can early diet influences long-term outcome? In the case of this present proposal the
question is re-formulated as: can carnivorous fishes, well adapted to high content of animal proteins in diet,
be programming by nutritional/environmental manipulation during early development to better use vegetal
proteins in later life? Cultured fishes currently rely on live preys as food during early development (i.e.
rotifers, Artemia) and this early feeding regime may limit their capacity to deal with plant protein sources in
later stages. However, current advances in early weaning from co-feeding strategies allow nutritional
manipulation in S. aurata during the first month of life, when several gastrointestinal regulatory mechanisms
continue to develop (Zambonino-Infante and Cahu, 2001; Kamaci et al., 2010; Micale et al., 2010).
Epigenetic programming: There is now substantial evidence that the early post-natal environment plays a
key role in determining (programming) changes in metabolism and physiology that impact performance in
later life, involving epigenetic processes (Bringhenti et al., 2011; Lillycrop and Burdge, 2012; Plagemann et
al., 2012). Epigenetic regulation can be defined as ‘‘the mechanisms of temporal and spatial control of gene
activity describing pathways different from those directly attributable to the underlying DNA sequence and
with an influence on the adaptive response of an organism’’ (Allis et al., 2007). The ‘‘epigenetic code’’
encompass the chromatin information mainly encrypted by histone signatures and DNA methylation profiles
(Milagro et al., 2010). Investigations on the effects of early nutrition on covalent modifications of DNA and
core histones point to the existence of epigenetic processes that are sensitive to nutritional regulation in early
life (Waterland et al., 2008; Thaler et al., 2009). Although most evidence of epigenetic regulation has been
obtained in humans or mammalian model organisms, there is a growing body of experimental evidence of
programming obtained in other groups. However, only few studies have provided some evidence of this
Part B - Page 3 / 24
FishPROG
phenomenon in fishes (Geurden et al., 2007; Vagner et al., 2007). In the present project, fish larvae will be
challenged with soybean and sunflower based microdiets and some of their epigenetic markers will be
compared to those of larvae reared exclusively on live food.
Hormetic response: Programming is highly dependent but not restricted to epigenetic processes, although
other mechanisms are largely unknown. In general, the terms “hormesis” refers to a phenomenon in which
adaptive responses to low doses of otherwise harmful conditions improve the functional ability of cells and
organisms (Vaiserman, 2011). Then, we also will study different protein markers to assess hormetic
responses can occur in fish larvae after nutritional challenge with low ‘conditioning’ doses of soybean and
sunflower proteins, with potential impact on later digestion skills.
Intestinal microbiota: Studies of intestinal microbiota in humans and vertebrate model organisms have
revealed that intestinal microbial communities are functionally essential in providing nourishment, regulating
epithelial development/renewal and influence innate immunity (Eckburg et al., 2005). Microbial cells and
their products can influence immune system of fishes (Kanther and Rawls, 2010) and its role in maintaining
intestinal integrity is of outmost importance to maintain health and welfare of the fish. Disruption of this first
barrier leads antigens to penetrate into deeper layers evoking immune responses and inflammation
(Niklasson et al., 2011). Also, the microbiota can degrade a variety of dietary substances that are otherwise
non-digestible or even deleterious to the host. Some recent studies have addressed the effects of feeding on
fish intestinal microflora of fishes (Merrifield et al., 2010; Dimitroglou et al., 2010).
Within the present project, we will investigate the diversity of the intestinal microbiota in developing fishes.
A recent study has shown that turnover of bacterial taxa within fishes (i.e. zebrafish) intestines is low (Yan et
al., 2012), thus it is possible to speculate that if a beneficial non-pathogenic microorganism is present in
water/food at the appropriate window, it would remains in the fish intestine. However, since fish intestine
colonization seems to follow a deterministic pattern (Kanther and Rawls, 2010; Yan et al., 2012), the
permanence of target microorganism (Saccharomyces cerevisiae) in the intestine will be followed through
time. In some mammalian models, S. cerevisiae variety boulardii (Sb) has shown to maintain the epithelial
integrity (Czerucka et al., 2000) while in others studies Sb inhibited the expression of pro-inflammatory
transcripts (Zanello et al., 2011). Also, mannan oligosaccharides (MOS) supplementation is known to
produce positive effects in the intestine of S. aurata (Dimitroglou et al., 2010) thus it will be also included as
dietary treatment. Mannan oligosaccharides [Bio-Mos, Alltech®] are derived from the cell wall of S.
cerevisiae. The value of pro- and pre-biotic stimulation during early ‘conditioning’ of fishes to plant proteins
has been never evaluated. Another aspect of fish-microbial interaction that will be addressed is the relation
between microbial proteases and the proteolytic degradation of the extracellular matrix in fish intestine,
which in higher vertebrates is known to be part of mucosal homeostasis, but also may contributes to
intestinal inflammation (Pruteanu et al., 2011).
1) Epigenetic programming due to dietary manipulation of larvae and its relationship with changes in
digestion physiology and metabolism in later stages. We will use DNA methylation and histone acetylation
as indicators of programming and results will be correlated with:
3) Microbiota changes induced by early feeding with plant proteins or by early pro/prebiotic stimulation.
Microbial richness will be studied by partial 16S rRNA sequence analysis. Results will be related with
growth and histological assessments of the remodeling/health of intestinal mucosa in later stages.
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FishPROG
4) Growth outcome of fishes subjected to different dietary/environmental manipulation during early feeding.
The multidisciplinary nature of the project is strong, involving a combination of well developed
biochemistry, molecular biology, microbiology and aquaculture.
Expected results: According to the vast literature on human/mammalian models and the growing evidences
in other animal groups including fishes, it is expected to find positive effects of early dietary/environmental
manipulation on the capacity of target fish to use dietary plant proteins in later life. Also, it is expected to
discover the level(s) at which these effects are exerted to provide room for further studies at the fundamental
and applied levels in this, and other European cultured fishes.
This project will use a hypothesis driven approach (studying a handful subset of key biomarkers) directed to
address the specific research question outlined above. The methods and techniques (see below) to be used are
all well established and widely used, so they are just briefly described with reference to relevant papers for
more details. The originality of the project relies on the use of these techniques to study a novel issue of fish
physiology, thus the success of the project depends on the experimental design. This research is designed in a
way that many samples (for accomplishing different tasks) can be taken from single experiments. This
allows direct comparisons among very different set of data (i.e. biochemical, molecular, etc) as
corresponding to the same experimental conditions (diet, time, etc) facilitating the integration of results.
Also, this kind of design is in line with the time frame of Marie Curie actions of two years.
S. aurata larvae will be randomly sorted to different experimental groups with appropriate replication. One
group will be fed with rotifers and Artemia as a ‘control’ feeding regime. Other groups will be subjected to
different manipulations: plant (soybean and sunflower) based microdiets (‘high dose’), rotational diet with
rotifers/Artemia and plant based microdiets (‘low dose’), plant based microdiets plus S. cerevisiae (‘probiotic
treatment’), plant based microdiets plus MOS (‘prebiotic treatment’). Samples (entire larvae) will be taken
during the first month of life taking into account important windows in development, for analysis of DNA
methylation, histone acetylation, intestinal microbiota diversity, digestive and metabolic enzymes activities,
expression rate of target genes, and histology. While analyzing those samples, the fish remaining in the
different groups will be cultured on a diet of high soybean and sunflower content. The growth of these
experimental groups will be compared, as well as indicators of digestion, metabolism, microflora, and
intestinal integrity at the end of the experiment. The analytical techniques to be used are:
b) Histone acetylation (Immunoblot analysis): Total protein of fish larvae will be extracted and analyzed for
acetylated histone (H3 and H4) as described before (Zhou et al., 2011). Briefly, electrophoresis will be
performed and then proteins will be transferred to a polyvinylidene difluoride membrane (Bio-Rad). Primary
antibodies including rabbit anti-acetylated histone H3, rabbit anti-acetylated histone H4, rabbit anti-histone
H3, rabbit anti-histone H4 (Upstate Biotechnology/MilliporeTM) and rabbit anti-human β-actin (Sigma®) will
be used according to the manufacturers’ instructions. Later, the membranes will be incubated with goat anti-
rabbit immunoglobulin G (IgG) conjugated with horseradish peroxidase (HRP) and protein antigens will be
detected using SuperSignal West Pico chemiluminescent substrate (Thermo Scientific) and exposure to
HyBlot CL film (Denville). The relative intensity of acetylated histones H3 and H4 will be compared with
that of total histones H3 and H4, respectively.
c) Intestinal microbiota: We will investigate the diversity of the intestinal microbiota in developing fish
subjected to different dietary manipulations, using 16S rRNA sequence analysis and Denaturing Gradient
Part B - Page 5 / 24
FishPROG
Gel Electrophoresis, as detailed before (Romero and Navarrete, 2006; Ringø et al., 2008; Yan et al., 2012).
This method is culture-independent and have been recognized as well suited for microbiota diversity studies
in fishes.
d) Proteases in the fish intestine: Metallo-protease and serine-protease (trypsin and chymotrypsin) activities
in fishes subjected to different early feeding regimens will be study by means of SensoLyte® fluorimetric
MMP assay kit (AnaSpec) for matrix metalloproteases, and BApNA and SApNA for trypsin and
chymotrypsin, respectively. Because of the possible origins of metalloproteinases from fish or microbiota,
composition of metalloproteinases will be examined by zymography using gelatin as the substrate.
Zymography is a widely used technique to study extracellular matrix-degrading enzymes and allows the
identification of different enzymes according to their electrophoretic mobility. Measurements will be done
by means of kinetic enzyme assays and electrophoresis as detailed in previous candidate papers (Perera et
al., 2008; Perera et al., 2012a).
e) Expression rate of target genes: Expression will be assessed by qPCR and absolute quantification of
digestive enzymes (trypsin, chymotrypsin, elastase, lipase, and amylase), an enzyme involved in mucosa
remodeling (matrix metallopeptidase), an intestinal transporter (alkaline phosphatase), growth hormone and
growth hormone receptor, prolactin, and two pro-inflammatory cytokines: interleukin 1-beta and Tumor
Necrosis Factor-α. Sequences for all these target proteins are available in the GenBank database, and the
qPCR procedures will be as detailed in previous candidate papers (Perera et al., 2010; Perera et al., 2012b).
f) Metabolism measurements: Enzyme assays will be performed for enzymes involved in energy metabolism
(carbohydrates metabolism: fructose 1,6-bisphosphatase, glucose 6-phosphate dehydrogenase, glycogen
phosphorylase, hexokinase, lactate dehydrogenase), protein metabolism (serine dehydratase, alanine-
aminotransferase and glutamate dehydrogenase), lipid metabolism (carboxyl esterase, lipase, acetyl CoA
carboxylase, fatty acid synthase, 3-hydroxy-3-methylglutaryl-CoA reductase, β-oxidation activity) as
routinely made in S. aurata (i.e. Laiz-Carrión et al., 2005)
g) Histology: Entire larvae and juvenile intestines will be fixed in 10% phosphate-buffered formalin,
dehydrated in ethanol, equilibrated in xylene, and embedded in paraffin according to standard histological
techniques. Sections of approximately 5 μm will be obtained and stained with haematoxylin and eosin before
examination under a light microscope. Intestinal morphology will be evaluated according to the following
criteria: (1) widening and shortening of the intestinal folds, (2) loss of the supranuclear vacuolization in
enterocytes, (3) widening of the central lamina propria within the intestinal folds, with increased amounts of
connective tissue, and (4) infiltration of a mixed leukocyte population in the lamina propria and submucosa.
These are the characteristics of the condition previously described as soybean meal-induced enteritis in
Atlantic salmon and other carnivorous fishes.
B 1.3. Originality and Innovative nature of the project and relationship to the 'state of the art' of
research in the field
The main goal of this proposal, to find new avenues for increasing the use of vegetal protein sources in
aquafeed, is in line with current Pan-European collaborative efforts. However, it covers an issue that has
been poorly studied in animals other than humans and mammalian models. To study the possibility for
increasing the use of plant proteins in diet in adult life by programming fish larvae during early manipulation
is a novel approach to an old need of the world aquaculture industry. While years of research have provided
lot of information on the nutrition and physiology of S. aurata and other fishes, results are expected to
increase the understanding of the capacity of S. aurata to cope with plant proteins in diet, by exploring for
the first time the capacity for physiological adjustment (reversible or irreversible plasticity) during early life.
This research will use state-of-the-art knowledge and state-of-the-art technology to develop an innovative
approach in the search of strategies for increasing the replacement of fish meal in aquafeeds.
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FishPROG
The EU has supported successful researches on the replacement of fish meal in aquafeed (e.g. RAFOA,
PEPPA, AQUAMAX). However, since some previous results are inconsistent regarding fishes performance,
there is a current Pan-European project (ARRAINA) focused in optimizing the use of vegetal protein sources
in aquafeeds by identify and validate “omic” biomarkers to be used as integrative tools for predict growth,
metabolic and health effects of dietary manipulation. It is not surprising that with the advent of post genomic
research and systems biology approach, fish-related problems are now being assessed using top-down or
data-driven approaches. This ongoing study is expected to increase the overall performance of fishes during
vegetal diet feeding. However, it is likely that large jumps in the substitution rates cannot be achieved
without impacting fish physiology and wellbeing, thus it is convenient to develop innovative approaches for
advancing to higher level of fish meal substitution, as proposed in this project. This project is in line with the
EU strategy for the sustainable development of European aquaculture.
Due to the species-specific (S. aurata) focus of this proposal, results have the potential capacity to increase
the competitiveness of the Mediterranean aquaculture industry. Also, results from the present proposal could
be integrated with those of ongoing studies (i.e. “omic” approaches) on main cultured fish in Europe, to
establish a wider platform for the scientific assessment of solutions for the world aquaculture need to
overcome current limitations in the replacement rate of fish meal in aquafeeds.
The “Instituto de Ciencias Marinas de Andalucía” (ICMAN) belong to CSIC, the largest multidisciplinary
research organization in Spain. ICMAN research is focused on basic and applied aspects of marine
aquaculture, with permanent contact with the industry, producing a significant body of knowledge on fish
reproduction, larval development, and nutrition. Respect to the main topic of this proposal, ICMAN has been
studying the possibility for fish meal replacement in aquafeed by plant protein sources for years, and present
proposal is in line with the ICMAN strategic trend of advancing to non-conventional and state-of-the-art
technology approaches for addressing this problem.
Studies at ICMAN have lead to the development (Patent-ES-2 127 140 A1 and Patent-ES-2002-01435) of
fish larvae rearing technologies and the replacement of live prey by inert microdiets (Yúfera et al., 1999;
Yúfera et al., 2003; Yúfera et al., 2005). Also, molecular tools have been implemented at ICMAN (Project
AGL2004-06669-C02 and Project AGL2007-64450-C02) allowing studies on the expression of digestive
enzymes in different fish species (Darias et al., 2006; Darias et al., 2007a,b), including S. aurata (Sánchez-
Amaya et al., 2009; Martins et al., 2010). In addition, ICMAN participation in the project Aquagenomics
(CSD2007-00002), and previously in the project Pleurogene, allowed the massive sequenciation of genes
done with the 454-pyrosequenciation technology, increasing considerably the number of annotated genes
available for fish larval stages (Yúfera et al., 2012). Currently, ICMAN participate in the project no. 288925
(ARRAINA) within the Seventh Framework Programme. In the field of fish larvae digestive physiology,
ICMAN sustains close international collaborations with the groups of Dr. Conceição (University of Algarve,
Portugal), Dr. Ronnestad (University of Bergen, Norway), Drs. Zambonino-Infante and Cahu (IFREMER,
Brest, France), among others. For years, ICMAN has attracted visiting scientists, PhD and honours students
and postdoctoral fellows to undertake research on the fields covered by this proposal.
Dr. Manuel Yúfera is Vice-director of ICMAN with lot of experience in larval fish ontogeny, feeding,
microdiets design and digestive physiology. The record of Dr. Yúfera in the research topic of this proposal is
essentially the one of ICMAN outlined above, since he has lead fish larval physiology research for 32 years
at ICMAN.
Part B - Page 7 / 24
FishPROG
The following is a selection of the most outstanding papers of the supervisor in the last 5 years and with
relation with this proposal. Research articles: General and Comparative Endocrinology 155: 686-694 (2008),
BMC Genomics 2008, 9:508 (2008), Aquaculture 285: 159-166 (2008), Aquaculture Research 40: 1191-1201 (2009),
Aquaculture Nutrition 15: 217-524 (2009), Aquaculture 302: 94-99 (2010), Marine Biotechnology 12: 214-229 (2010),
Aquaculture Research 41: 613-640 (2010), Aquaculture 306: 315-321 (2010), Aquaculture Research 41, 1523-1532
(2010), Lipids 45: 1011-1023 (2010), Aquaculture 309: 159-164 (2010), General and Comparative Endocrinology 171:
203-210 (2011), Aquaculture 341: 282-284 (2011), Fish Physiology and Biochemistry 37: 733-743 (2011), PLoS ONE
7(3) e33687 (2012), Journal of Applied Ichthyology 28(3): 477-467 (2012), Comparative Biochemistry and Physiology
162 A: 317-322 (2012), Marine Biotechnology 14: 423-435 (2012), British Journal of Nutrition (2012, in press). Book
chapters in: An Introduction to Applied Phycology. I. Akatsuka (ed.) SBP Academic Publishing, The Hague (1990),
Physiology and Biochemistry of Marine Fish Larvae. B.T. Walther & H.J. Fyhn (eds.), University of Bergen, Bergen
(1993), Sparidae. Biology and aquaculture of gilthead seabream and other species (M. Pavlidis & C.C. Mylonas eds.),
Wiley-Blackwell, Oxford, UK (2011), Larval Fish Nutrition (G. Joan Holt ed.). Wiley-Blackwell, Ames, Iowa (2011).
The supervisor has been Reviewer for several scientific journals, and he is part of the Editorial
Board of Aquaculture Nutrition, edited by Wiley-Blackwell.
References
Allis, C.D., Jenuwein, T., Reinberg, D., 2007. Epigenetics. New York: Cold Spring Harbor Lab Press.
Bringhenti, I.; Schultz, A.; Rachid, T., Bomfim, M.A., Mandarim-de-Lacerda, C.A., Aguila, M.A., 2011. An
early fish oil-enriched diet reverses biochemical, liver and adipose tissue alterations in male offspring
from maternal protein restriction in mice. J. Nutr. Biochem. 22, 1009–1014.
Czerucka, D., Dahan, S., Mograbi, B., Rossi, B., Rampal, P., 2000. Saccharomyces boulardii preserves the
barrier function and modulates the signal transduction pathway induced in enteropathogenic Escherichia
coli-infected T84 cells. Infect. Immun. 68: 5998–6004.
Darias, M.J., Murray, H.M., Gallant, J.W., Astola, A., Douglas, S.E., Yúfera, M., Martínez-Rodríguez, G.,
2006. Characterization of a partial alpha amylase clone from red porgy (Pagrus pagrus): Expression
during the larval development. Comp. Biochem. Physiol. B. 143:209-218.
Darias, M.J., Murray, H.M., Gallant, J.W., Douglas, S., Yúfera, M., Martínez-Rodríguez, G., 2007b. The
spatiotemporal expression pattern of trypsinogen and bile salt-activated lipase during the larval
development of red porgy (Pagrus pagrus, Pisces, Sparidae). Mar. Biol., 152:109-118.
Darias, M.J., Murray, H.M., Gallant, J.W., Douglas, S., Yúfera, M., Martínez-Rodríguez, G., 2007a.
Ontogeny of pepsinogen and proton pump expression in red porgy (Pagrus pagrus): Determination of
stomach functionality. Aquaculture 270:369-378.
Dimitroglou, A., Merrifield, D.L., Spring, P., Sweetman, J., Moate, R., et al., 2010. Effects of mannan
oligosaccharide (MOS) supplementation on growth performance feed utilization, intestinal histology
and gut microbiota of gilthead sea bream (Sparus aurata). Aquaculture 300: 182-188.
Eckburg, P.B., Bik, E.M., Bernstein, C.N., Purdom, E., Dethlefsen, L., et al. (2005) Diversity of the human
intestinal microbial flora. Science 308: 1635–1638.
Geurden, I., et al., 2007. Early feeding of carnivorous rainbow trout (Oncorhynchus mykiss) with a
hyperglucidic diet during a short period: effect on dietary glucose utilization in juveniles. Am. J.
Physiol., 292: R2275-R2283.
Kamaci, H.O., Suzer, C., Çoban, D., Saka, S., Firat, K., 2010. Organogenesis of exocrine pancreas in
sharpsnout sea bream (Diplodus puntazzo) larvae: characterization of trypsin expression. Fish Physiol.
Biochem. 36, 993-1000.
Kanther, M., Rawls, J.F., 2010. Host-microbe interactions in the developing zebrafish. Curr. Opin. Immunol.
22: 10-19.
Laiz-Carrión, R., Sangiao-Alvarellos, S., Guzmán, J.M., Martín del Río, M.P., Soengas, J.L., Mancera, J.M.,
2005. Growth performance of gilthead sea bream Sparus aurata in different osmotic conditions:
Implications for osmoregulation and energy metabolism. Aquaculture 250, 849–861.
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Lillycrop, K.A., Burdge, G.C., 2012. Epigenetic mechanisms linking early nutrition to long term health, Best
Practice & Research Clinical Endocrinology & Metabolism. doi:10.1016/j.beem.2012.03.009
Márquez, L., Robles, R., Morales, G.A., Moyano, F.J., 2011. Gut pH as a limiting factor for digestive
proteolysis in cultured juveniles of the gilthead sea bream (Sparus aurata). Fish Physiol. Biochem.
38(3):859-69.
Martins, D.A., Estévez, A., Stickland, N.C., Simbi, B.H., Yúfera, M., 2010. Dietary lecithin source affects
growth potential and gene expression in Sparus aurata larvae. Lipids 45:1011-1023.
Matthews, R.P., EauClaire, S.F., Mugnier, M., Lorent, K.,Cui, S., Ross, M.M., Zhang, Z., Russo, P., Pack,
M., 2011. DNA hypomethylation causes bile duct defects in zebrafish and is a distinguishing feature of
infantile biliary atresia. Hepatology 53(3): 905–914.
Merrifield, D.L., Dimitroglou, A., Foey, A., Davies, S.J., Baker, R.R., Bøgwald, J., Castex, M., Ringø, E.,
2010. The current status and future focus of probiotic and probiotic applications for salmonids.
Aquaculture 302, 1-18.
Micale, V., Levanti, M.B., Germana, A., Guerrera, M.C., Kurokawa, T., Muglia, U., 2010. Ontogeny and
distribution of cholecystokinin-immuno reactive cells in the digestive tract of sharpsnout sea bream,
Diplodus puntazzo (Cetti, 1777), during larval development. Gen. Comp. Endocrinol. 169, 23–27.
Milagro, F.I., Campion, J., Martinez, J.A., 2010. Metabolism and chromatin dynamics/remodelling. In:
Tollefsbol Trygu, Ed. Handbook of epigenetics: the new molecular and medical genetics. UK, Elsevier.
Montoya, A., López-Olmeda, J.F., Yúfera, M., Sánchez-Muros, M.J., Sánchez-Vázquez, F.J., 2010. Feeding
time synchronizes daily rhythms of behaviour and digestive physiology in gilthead seabream (Sparus
aurata). Aquaculture 306 (1-4), 315-321.
Niklasson, L., Sundh, H., Fridell, F., Taranger, G.L., Sundell, K., 2011. Disturbance of the intestinal mucosal
immune system of farmed Atlantic salmon (Salmo salar), in response to long-term hypoxic conditions.
Fish Shellfish Immunol. 31, 1072-1080.
Nikolopoulou, D., Moutou, K.A., Fountoulaki, E., Venou, B., Adamidou, S., Alexis, M.N., 2011. Patterns of
gastric evacuation, digesta characteristics and pH changes along the gastrointestinal tract of gilthead sea
bream (Sparus aurata L.) and European sea bass (Dicentrarchus labrax L.). Comp. Biochem. Physiol.
158A (4), 406-414.
Perera, E., Moyano, F. J., Díaz, M., Perdomo-Morales, R., Montero, V., Alonso, E., Carrillo, O., Galich, G.,
2008. Polymorphism and partial characterization of digestive enzymes in the spiny lobster Panulirus
argus. Comp Biochem Physiol B 150: 247–254.
Perera, E., Pons, T., Hernández, D., Moyano, F.J., Martínez-Rodríguez. G., Mancera, J.M. 2010. New
members of the brachyurins family in lobster include a trypsin-like enzyme with amino acid
substitutions in the substrate-binding pocket. FEBS Journal 277, 3489–3501.
Perera, E., Rodríguez-Casariego, J., Rodríguez-Viera, L., Calero, J., Perdomo-Morales, R., Mancera, J. M.,
2012a. Lobster (Panulirus argus) hepatopancreatic trypsin isoforms and their digestion efficiency. Biol.
Bull. 222: 158-170.
Perera, E., L. Rodríguez-Viera, J. Rodríguez-Casariego, I. Fraga, O. Carrillo, G. Martínez-Rodríguez, J. M.
Mancera, 2012b. Dietary protein quality differentially regulates trypsin enzymes at the secretion and
transcription levels in the lobster (Panulirus argus) by distinct signaling pathways. J. Exp. Biol. 215,
853-862.
Plagemann, A., Harder, T., Schellong, K., Schulz, S., Stupin, J., 2012. Early postnatal life as a critical time
window for determination of long-term metabolic health. Best Practice & Research Clinical
Endocrinology & Metabolism, doi:10.1016/j.beem.2012.03.008
Pruteanu, M., Hyland, N.P., Clarke, D. J., Kiely, B., Shanahan, F., 2011. Degradation of the extracellular
matrix components by bacterial-derived metalloproteases: implications for inflammatory bowel
diseases. Inflamm. Bowel Dis. 17, 1189-1200.
Ringø, E., Sperstad, S., Kraugerud, O.F., Krogdahl, Å., 2008. Use of 16S rRNA gene sequencing analysis to
characterise culturable intestinal bacteria in Atlantic salmon (Salmo salar) fed diets with cellulose or
non-starch polysaccharides from soy. Aquac. Res. 39, 1087-1100.
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Robaina, L., Izquierdo, M.S., Moyano, F.J., Socorro, J., Vergara, J.M., Montero, D., Fernández-Palacios, H.,
1995. Soybean and lupin seed meals as protein sources in diets for gilthead seabream (Sparus aurata):
nutritional and histological implications. Aquaculture 130 (2-3), 219-233.
Romero, J., Navarrete, P., 2006. 16S rDNA-based analysis of dominant bacterial populations associated with
early life stages of coho salmon (Oncorhynchus kisutch). FEMS Microbiol. Ecol. 51, 422-430.
Saera-Vila, A., Calduch-Giner, J.A., Gómez-Requeni, P., Médale, F., Kaushik, S., Pérez-Sánchez, J., 2005.
Molecular characterization of gilthead sea bream (Sparus aurata) lipoprotein lipase. Transcriptional
regulation by season and nutritional condition in skeletal muscle and fat storage tissues. Comp.
Biochem. Physiol. 142B, 224-32.
Sánchez-Amaya, M.I., Yúfera, M., Martínez-Rodríguez, G., 2009. Cloning and expression of digestives
enzymes precursors during ontogeny in gilthead seabream (Sparus aurata) under different feeding
conditions. Eur. Aquac. Soc., Special Publ. 38: 388-391.
Santigosa, E., García-Meilán, I., Valentin, J.M., Pérez-Sánchez, J., Médale, F., Kaushik, S., Gallardo, M.A.,
2011. Modifications of intestinal nutrient absorption in response to dietary fish meal replacement by
plant protein sources in sea bream (Sparus aurata) and rainbow trout (Onchorynchus mykiss).
Aquaculture 317 (1-4), 146-154.
Santigosa, E., Sánchez, J., Médale, F., Kaushik, S., Pérez-Sánchez, J., Gallardo, M.A., 2008. Modifications
of digestive enzymes in trout (Oncorhynchus mykiss) and sea bream (Sparus aurata) in response to
dietary fish meal replacement by plant protein sources. Aquaculture 282 (1-4), 68-74.
Silva, F.C.P., Nicoli, J.R., Zambonino-Infante, J.L., Le Gall, M.M., Kaushik, S., Gatesoupe, F.J., 2010.
Influence of partial substitution of dietary fish meal on the activity of digestive enzymes in the intestinal
brush border membrane of gilthead sea bream, Sparus aurata and goldfish, Carassius auratus.
Aquaculture 306 (1-4), 233-237.
Thaler, R., Karlic, H., Rust, P., Haslberger, A.G., 2009. Epigenetic regulation of human buccal mucosa
mitochondrial superoxide dismutase gene expression by diet. Br. J. Nutr.101:743–9.
Vagner, M., Zambonino-Infante, J.L., Robin, J.H., Person-Le Ruyet, J., 2007. Is it possible to influence
European seabass (Dicentrarchus labrax) juvenile metabolism by a nutritional conditioning during
larval stage? Aquaculture 267, 165-174.
Vaiserman, A.M., 2011. Hormesis and epigenetics: Is there a link? Ageing Research Reviews 10, 413-421.
van den Ingh, T., Olli, J., Krogdahl, A., 1996. Alcohol-soluble components in soybeans cause morphological
changes in the distal intestine of Atlantic salmon, Salmo salar L. J. Fish Dis. 19, 47-53.
Waterland, R.A., Travisano, M., Tahiliani, K.G., Rached, M.T., Mirza, S., 2008. Methyl donor
supplementation prevents transgenerational amplification of obesity. Int. J. Obes. (Lond), 32:1373-9.
Yan, Q., van der Gast, C.J., Yu, Y., 2012. Bacterial Community Assembly and Turnover within the
Intestines of Developing Zebrafish. PLoS ONE 7(1): e30603. doi:10.1371/journal.pone.0030603
Yúfera, M., Fernández, C., Pascual, E., 2005. Food microparticles for larval fish prepared by internal
gelation. Aquaculture 245: 253-262.
Yúfera, M., Kolkovski, S., Fernández-Díaz, C., Rinchard, J., Lee, K.J., Dabrowski, K, 2003. Delivering
bioactive compounds to fish larvae using microencapsulated diets. Aquaculture 227: 277-291.
Yúfera, M., Pascual, E., Fernández-Díaz, C., 1999. A highly efficient microencapsulated food for rearing
early larvae of marine fish. Aquaculture 177: 249-256.
Yúfera, M., Halm, S., Beltran, S., Fusté, B., Planas, J.V., Martínez-Rodríguez, G., 2012. Transcriptomic
Characterization of the Larval Stage in Gilthead Seabream (Sparus aurata) by 454 Pyrosequencing.
Mar. Biotechnol. DOI 10.1007/s10126-011-9422-3.
Zambonino-Infante, J.L., Cahu, C.L., 2001. Ontogeny of the gastrointestinal tract of marine fish Larvae.
Comp. Biochem. Physiol. 130 C, 477-487.
Zanello, G., Berri, M., Dupont, J., Sizaret, P-Y., D’Inca, R., Salmon, H., Meurens, F., 2011. Saccharomyces
cerevisiae Modulates Immune Gene Expressions and Inhibits ETEC-Mediated ERK1/2 and p38
Signaling Pathways in Intestinal Epithelial Cells. PLoS ONE 6(4): e18573.
doi:10.1371/journal.pone.0018573
Zhou, W., Liang, I-C., Yee, N.S., 2011. Histone deacetylase 1 is required for exocrine pancreatic epithelial
proliferation in development and cancer. Cancer Biology & Therapy 11:7, 659-670.
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B 2. TRANSFER OF KNOWLEDGE
a) Dissemination of the project results to the scientific community and stockholders in general (feed
producers and food processing industries, farmers, policy makers, consumers) will be done by means of: 1)
national and international symposia on aquaculture, fish physiology and nutrition, 2) scientific papers in
specialized peer-reviewed journals (Aquaculture, Journal of Experimental Biology, Marine Biology, etc), and
3) technical journals (i.e. AquaFeeds, Aquaculture Europe, etc). Free access to peer-reviewed articles will be
ensured via the subject based repositories of the candidate (ResearcherID, OceanExpert, ResearchGate, and
IAM scientist) and via the web site of ICMAN.
b) The project and significant findings, in an amenable form to the general public, will be presented at web
sites for Aquaculture diffusion (FOESA, Mis peces, etc). Also, novel details on methodology and results will
be included in the specialization courses in which ICMAN and the supervisor of this proposal are involved
(Master of doctorate on fisheries technology “Acuipesca” by University of Cadiz in Spain, and the
international Training School on fish larvae biology and rearing by the European net Larvanet).
c) There is a strong and clear two-way transfer of knowledge objective linked with the transfer of a wide
array of biochemical methods and biochemical expertise from the candidate to the host institution, while the
candidate will expands his experience due to outstanding training in advance molecular biology at ICMAN.
Both the candidate and the supervisor have a good track of scientific results made available to the scientific
community and the general public, which warrant the success in the transfer of knowledge objectives.
B 2.2. Potential of transferring knowledge to European host and/or bringing knowledge to Europe
Several biochemical tools needed for this project will be implemented at ICMAN by the candidate, since he
has a broad expertise in biochemical work. It is anticipated that 30 % of the research fellow’s time will be
devoted to the acquisition of new equipments, setup of kinetic enzyme assays, enzyme zymograms, etc. It is
widely accepted that gene results are of a relatively poor physiological significance if they are not
corroborated at the protein (i.e. enzyme) level. For acquiring this kind of results, up until now ICMAN relies
on collaborations with other scientific institutions in Spain and abroad. The implementation of those
techniques at ICMAN by the candidate does not mean that ICMAN collaborative efforts will decrease.
Instead, this will certainly enlarge the ICMAN capacity to be engaged in collaborative projects in the future
and thus, this project will also strengthen European cooperation in the topics covered.
Also, since the project will apply an innovative approach such as nutritional programming in fish larvae,
expected outputs will strengthen the European advances already made in larval rearing technologies, and
European knowledge by disseminating research outcomes not only through scientific publications, but also
through media available to different stakeholders. Results emerging from the project will also be of interest
to academia in Europe and throughout the world. The information will be obtained is relevant not only to the
subject species of this project (S. aurata) but also to all other species of commercial interest to fish farming,
in which sustainable feeds could also offer environmental and productivity benefits.
While the candidate is expected to expand the array of analytical tools and biochemical know-how of
ICMAN, he will receive world-class training in advanced molecular biology (i.e. DGGE) and fish larvae
rearing techniques. This will certainly increase the competence and research profile of the candidate,
important for the transfer of knowledge to his country and for increasing the possibility to set up further
collaboration with ICMAN and other European scientific institutions in fields (i.e. fish larvae physiology)
presenting unresolved challenges to research innovation.
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FishPROG
B 3. RESEARCHER
The main research interests of the candidate are the digestive biochemistry and digestive physiology of
marine organisms. As its own idea, the candidate has been using during the last ten years a lobster species as
a model to assess fundamental issues like the physiological value of digestive enzyme polymorphism, the
digestive enzymes regulation mechanisms and food features/signals involved in such regulation. The overall
research aim of the candidate is to explain the physiological constrains that make some species not suited for
artificial feeding. For addressing such a complex question, the candidate has applied a wide variety of
techniques at biological, biochemistry and molecular levels. Results obtained have been published in 23
scientific papers. Research results of the candidate have been used for building new capacities mainly by
means of the post-graduate courses the candidate leads at the University of Havana, and they have been cited
in several research articles, and in some review articles and book chapters. The candidate has leaded as
principal researcher two successive international projects founded by the International Foundation for
Science (Stockholm, Sweden). Also, the candidate has been reviewer for several international journals,
illustrating international recognition in the main fields covered by the present proposal: aquaculture and
physiology of marine organisms. The candidate is member of the Pan-American Marine Biotechnology
Association (PAMBA).
As outcome of his research experience, the main achievements/strengths of the candidates are:
a) More than ten years of continuous upgrading in teaching, research skills, and research leadership,
b) A strong capacity for teamwork, and a growing establishment of fruitful international collaborations,
c) The development of an independent, usually hypothesis-driven philosophy, to address complex biological
problems that require step by step approximations and multidisciplinary approaches,
d) Thirteen research papers in well recognized per-reviewed international journals and ten others scientific
publications, that have granted the candidate with national and international recognition in the fields of
digestive biochemistry and physiology of marine organisms.
Curriculum vitae
Personal details
Academic achievements
Part B - Page 12 / 24
FishPROG
Professional activities
• 2011-to date. Head Aquaculture Department, Center for Marine Research, University of Havana (UH).
• 2008-2012. Enrolled in a Doctoral program involving the University of Cadiz (UCA) and the UH.
• 2003-to date. Aggregate Researcher at the Center for Marine Research of the UH.
• 2000-2003. MSc. Student at the Center for Marine Research of the UH.
• 1998-2000. Undergraduate research assistant at the Center for Marine Research of the UH.
Languages
The candidate speaks and writes correctly Spanish (mother tongue), and English.
As part of his academic formation, the candidate has received the following post-graduate courses at the
Center for Marine Research of the University of Havana in Cuba: Ictiology, Physiology of Marine
Organisms, Aquaculture Nutrition, Marine Aquaculture, Design of Aquaculture Facilities, Oceanography,
Marine Ecology, Plankton, Zoobenthos, Phytobenthos, Research Methodology, Pathology, Fisheries.
Additionally, the candidate has obtained different fellowships for attending to the following international
post-graduate training courses: Chemosensory biology in the marine environment (Bermudas Biological
Station for Research, Bermudas, 2004 Fellowship from the Ernest Stempel Fund), Basic Molecular Biology
Techniques (CIBNOR, Mexico, 2005 Fellowship from “Red L. vannamei, CYTED), Culture of Commercial
Mollusks (Catholic University of the North, Chile, 2006 Fellowship from Japan International Cooperation
Agency), Biochemical characterization of digestive enzymes (University of Almeria, Spain, 2007 Fellowship
from Red Nutrition, CYTED), Training on molecular biology techniques (University of Cadiz, Spain, 2008
PhD Fellowship from AUIP and University of Cadiz).
The candidate has participated in four national (Cuban) research projects funded by the University of
Havana, the Ministry of Higher Education, the Ministry of Fishing Industry, and the Ministry of Science,
Technology and Environment. During the last years, the candidate has leaded as principal researcher the
international (Stockholm, Sweden) projects: International Foundation for Science Projects (IFS No. A/4306-
1, 2008-2010 and IFS No. A/4306-2, 2011-2012).
The main candidate award was “Award of the Rector of University of Havana” to the most relevant scientific
activity at the University of Havana in the year 2008. However, the recent scientific activity of the candidate
has been also recognized. The scientific production of the University of Havana (UH) accounts for the 20 %
of the Cuban scientific creation, and in a recent (2011) UH-productivity survey on the Web of Science, the
candidate resulted among the researchers of higher i-H, and as the higher impact author in the field of Marine
Science at the University of Havana.
CV information regarding patents, publications (published and reviewed), and teaching activities is provided
in the next (B3.2) section.
Part B - Page 13 / 24
FishPROG
Patents:
Patent 2011-0243 (Cuban Office for Industrial Property): Composición a partir de extracto de hemocitos de
langosta para la detección de lipopolisacáridos, peptidoglicanos y 1,3-β-D-glucanos (Composition from the
extract of lobster hemocytes for the detection of lipopolysaccharides, peptidoglucans, and 1,3-β-D-glucans).
Book chapters:
Perera, E. 2008. Tropical spiny lobster aquaculture: how far from success? Prospect for the Caribbean. In:
Aquaculture Research Trends. Stephen H. Schwartz Ed. Nova Science Publishers, Inc., Hauppauge,
NY, ISBN: 978-1-604556-217-0.
Machlis, G., Frankovich, T.A., Alcolado, P.M., García-Machado, E., Caridad Hernández-Zanuy, A., Hueter,
R.E., Knowlton, N., Perera, E., Tunnell Jr., J.W., 2012. Ocean policy—US-Cuba scientific
collaboration: Emerging issues and opportunities in marine and related environmental sciences.
Oceanography 25(2):227–231.
Perera, E., Rodríguez-Casariego, J., Rodríguez-Viera, L., Calero, J., Perdomo-Morales, R., Mancera, J. M.,
2012. Lobster (Panulirus argus) hepatopancreatic trypsin isoforms and their digestion efficiency.
Biol Bull. 222: 158-170.
Perera, E., L. Rodríguez-Viera, J. Rodríguez-Casariego, I. Fraga, O. Carrillo, G. Martínez-Rodríguez, J. M.
Mancera, 2012. Dietary protein quality differentially regulates trypsin enzymes at the secretion and
transcription levels in the lobster (Panulirus argus) by distinct signaling pathways. J Exp Biol 215,
853-862.
Perera, E., Moyano, F. J., Rodríguez-Viera, L., Cervantes, A., Martínez-Rodríguez, G., Mancera, J. M.
2010. In vitro digestion of protein sources by crude enzyme extracts of the spiny lobster Panulirus
argus (Latreille, 1804) hepatopancreas with different trypsin isoenzyme patterns. Aquaculture 310,
178-185.
Perera, E., Pons, T., Hernández, D., Moyano, F.J., Martínez-Rodríguez. G., Mancera, J.M., 2010. New
members of the brachyurins family in lobster include a trypsin-like enzyme with amino acid
substitutions in the substrate-binding pocket. FEBS Journal 277, 3489-3501.
Perera, E., Moyano, F. J., Díaz, M., Perdomo-Morales, R., Montero, V., Rodríguez-Viera, L., Alonso, E.,
Carrillo, O., Galich, G., 2008. Changes in digestive enzymes through developmental and molt stages
in the spiny lobster, Panulirus argus. Comp Biochem Physiol B 151: 250-256.
Perera, E., Moyano, F. J., Díaz, M., Perdomo-Morales, R., Montero, V., Alonso, E., Carrillo, O., Galich, G.,
2008. Polymorphism and partial characterization of digestive enzymes in the spiny lobster Panulirus
argus. Comp Biochem Physiol B 150: 247-254.
Perdomo-Morales, R., Montero-Alejo, V., Perera, E., Pardo-Ruiz, Z., Alonso-Jiménez, E., 2008.
Hemocyanin-derived phenoloxidase activity in the hemolymph of the spiny lobster Panulirus argus.
Biochimica et Biophysica Acta 1780: 652-658.
Perdomo-Morales, R., Montero-Alejo, V., Perera, E., Pardo-Ruiz, Z., Alonso-Jiménez, E., 2007.
Phenoloxidase activity in the hemolymph of the spiny lobster Panulirus argus. Fish & Shellfish
Immunol 23: 1187-1195.
Perera, E., Díaz-Iglesias, E., Fraga, I., Carrillo, O., Galich, G., 2007. Effect of body weight, temperature and
feeding on the metabolic rate in the spiny lobster Panulirus argus (Latreille, 1804). Aquaculture
265: 261-270.
R. Cruz, R. Lalana, E. Perera, M. Baez, R. Adriano, 2006. Large scale assessment of recruitment for the
spiny lobster Panulirus argus aquaculture industry. Crustaceana 79 (9): 1071-1096.
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FishPROG
Perera, E., Fraga, I., Carrillo, O., Díaz-Iglesias, E., Cruz, R., Báez, M., Galich, G., 2005. Evaluation of
practical diets for the Caribbean spiny lobster Panulirus argus (Latreille, 1804): effects of protein
sources on substrate metabolism and digestive proteases. Aquaculture 244: 251-262.
Rodríguez-Viera, L., Perera, E., 2012. Panulirus argus postlarva performance fed with fresh squid.
Rev.Invest.Mar. 32(1):1-7.
Rodríguez-Casariego, J., Perdomo-Morales, R., Perera, E., 2012. Purificación de isoformas de proteasas
tipo tripsina de crustáceos. Rev.Invest.Mar. 32(1): 8-15.
Díaz-Iglesias, E., F. Galicia, L. F. Bückle Ramírez, M. Báez-Hidalgo y E. Perera, 2010. Respiración,
excreción y relación oxígeno: nitrógeno de filosomas de la langosta roja Panulirus interruptus.
Hidrobiológica 20(2): 1-13.
Desislava Dávila, Raúl Cruz, Ana Sanz, E. Perera y Germán Saavedra, 2009. Histología gonadal de la
langosta Panulirus argus. Hembras. Rev. Invest. Mar. 30 (3): 215-225.
Dávila, D., Cruz, R., Perera, E. Galich, G. S., 2007. Apareamiento y desove de la langosta Panulirus argus
(Latreille, 1804) en cautiverio en Cuba. Rev. Invest. Mar. 28 (1):29-41.
Perera, E., Díaz-Iglesias, E., Báez-Hidalgo, M., Nodas, F., 2003. Análisis bioenergético de la alimentación
natural en juveniles de la langosta común Panulirus argus (Latreille, 1804): Amphineura.
Rev.Invest.Mar. 24 (1): 17-22.
Perera, E., Díaz-Iglesias, E., Báez-Hidalgo, M., Nodas, F., 2003. Análisis bioenergético de la alimentación
natural en juveniles de la langosta común Panulirus argus (Latreille, 1804): Echinoidea. Rev. Invest.
Mar. 24 (1): 23-28.
Díaz-Iglesias, E., Báez-Hidalgo, M., Perera, E., Fraga, I., 2002. Respuesta metabólica de la alimentación
natural y artificial en juveniles de la langosta espinosa Panulirus argus (Latreille, 1804).
Hidrobiológica 12 (2): 101-112.
Other publications:
Perera, E. and Díaz-Iglesias (2004): Are we developing formulated diet attractive enough for spiny lobsters?
The Lobster Newsletter, 17(1): 16-19.
Báez Hidalgo, M; Díaz Iglesias, E.; Perera, E (2004): Number of larvae hatched vs. female size in the red
lobster. The Lobsters Newsletter, Vol. 17 (1):10-12.
Perera, E., 2006. State of the art of the growout of spiny lobsters postlarva.
Perera, E., 2005. State of the art of the spiny lobsters larval culture.
Papers Reviewed:
The candidate has been reviewer for the following international journals: Aquaculture, Journal of the World
Aquaculture Society, Aquaculture Research, Journal of the World Aquaculture Society, Comparative
Biochemistry and Physiology, Marine Biology, Crustaceana, and Scientia Marina.
Teaching Activities:
The early join of the candidate to the University of Havana staff let him to progressively acquire expertise in
teaching activities at different levels as follows:
Part B - Page 15 / 24
FishPROG
i) Undergraduate teaching (lectures) at the Faculty of Biology of the University of Havana: Statistics and
Experimental Design (2001), Respirometry of Marine Organism (2001), Zoology (2003), Biology of Spiny
Lobsters (2008), Comparative Animal Physiology (2009). Director of two Bachelor Theses (2003 and 2008).
ii) Post-graduate teaching (full courses) at the Center for Marine Research of the University of Havana:
Physiology of Marine Organisms (2002-2012) and Design of Aquaculture Facilities (2007-2012), both as
part of the MSc. Program at the Center for Marine Research of the University of Havana. Director of two
M.Sc. Theses (2010 and 2011). Currently, the candidate is the supervisor of a Ph.D. student at the University
of Havana.
The fact that in half of the 23 scientific papers of the candidate he appears as both the first author and the
corresponding author demonstrate the independence and leadership features of the candidate. In addressing
complex digestive physiology issues, the candidate has applied a wide variety of techniques at biological,
biochemistry, and molecular levels, as well as computer modeling tools. This fact is reflected in the
candidate’s papers in the number of co-authors, being a proof of the ability of the candidate for agglutinating
high quality scientists from different fields into a specific scientific problem. Respect to the transfer of
knowledge, the candidate has progressed steadily from lead few Bachelor and M.Sc. students to be the
principal supervisor of a Ph.D. student at the University of Havana and now is planning to be external
supervisor of a Ph.D. student at the Alfred Wegener Institute, Bremerhaven, Germany. The candidate is
currently the Head of the Aquaculture Department at the Center for Marine Research of the University of
Havana. During the last years, the candidate has leaded as principal researcher two successive international
projects founded by the International Foundation for Science (Stockholm, Sweden), indicating he has good
management skills in addition to scientific quality.
As quoted above, the candidate has extensive experience in applying different tools to study digestive
physiology fundamental issues, with potential application in aquaculture. The candidate profile match with
the proposed project in terms of a) enough experience to accomplish independent research at advanced level;
b) strong background in biochemistry and molecular biology applied to digestive physiology issues; c)
previous experience in the study of physiological constrains in the feeding of some “difficult to feed” marine
organisms; d) a good track of teamwork and successful international collaborations for addressing complex
physiological problems, usually requiring multidisciplinary/integrative approaches; e) a close relationship
between his research interest and skills and industry-related problems (i.e. aquaculture); and f) high capacity
to assimilate new techniques/methodologies and for transfer of knowledge.
Additionally, from a pure scientific point of view, the candidate is highly interested in using different
biological organisms (i.e. fishes in this proposal) as models for building new conceptual frameworks for
addressing complex physiological phenomena. Specifically, the candidate main interest is to always move
beyond descriptions of ‘what’ to explanations of ‘why’ and ‘how’, to outline underlying concepts in
digestive physiology. This project is perfectly tailored for making use of the applicant’s existing expertise
while significantly extending his experience in the field of digestive physiology.
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FishPROG
B 4. IMPLEMENTATION
ICMAN wet facilities allow the execution of growth, nutrition, reproduction, larval development and
pathology studies in Mediterranean fish species (i.e. S. aurata), thus are well suited for accomplishing all
bioassays proposed in this project. Besides, due to the long tradition at ICMAN in culturing fish larvae, all
needed auxiliary cultures (i.e. microalgae, rotifers, Artemia) are well established, ensuring the logistic
support to fish larvae trials. Microdiets will be prepared by the method of emulsification and internal gelation
developed at ICMAN by the supervisor of the present proposal, and diet formulation will be based in
ICMAN previous result for S. aurata. The analytical laboratories of ICMAN are equipped with the most
advanced analytical tools for microscopy, histology, and molecular biology. ICMAN sustains close
international collaborations with the most relevant European scientific institutions involved in fish
aquaculture/physiology, including the groups of Dr. Conceição (University of Algarve, Portugal), Dr.
Ronnestad (University of Bergen, Norway), Drs. Zambonino-Infante and Cahu (IFREMER, Brest, France),
among others.
B 4.2. Practical arrangements for the implementation and management of the research project
For provision of experimental material, the project will be dependent upon the experiment that will be
carried out within the same ICMAN and conducted by the candidate. Broodstock fishes or fish eggs, as
needed, will be obtained from local hatcheries, from the Fish Culture Facilities of the University of Cadiz or
from ICMAN own facilities. Thus, the costs of the trials including fish, tank, live feed, husbandry, and
management of the trials will all be the responsibility of the ICMAN. The candidate will be supervised until
he achieves experience in fish larvae (S. aurata) rearing protocols. The histological and molecular analyses
will be carried out also within the ICMAN facilities, in modern state-of-the-art, dedicated laboratories, that
will be available for the candidate. The Marine Biology and Aquaculture Department at ICMAN has
participated and participates in different nationals and internationals (i.e. Pleurogene, Aquagenomics,
ARRAINA) projects using modern molecular tools and thus, the group has been running advanced molecular
analysis as routine, though continuously up-dated. All genes to be analyzed are available on GenBank
database, this representing a huge save of time, which is important in this two-year research. Thus, all that
will be required for the present project is to set-up and run the molecular analysis (no time-consuming
cloning is necessary).
Altogether, these facts guarantee that the candidate will be trained and working in a group with broad
experience in the field and with access to all aquaculture and analytical facilities needed for the project
development. High qualified staff will be in charge supervising the candidate and aiding him in assessing the
outcome in the context of state-of-the-art digestion physiology of fish larvae. On the other hand, the
biochemical tools needed for this project will be implemented at ICMAN by the candidate, since he has a
broad expertise in biochemical work. It is anticipated that 30 % of the research fellow’s time will be devoted
to the acquisition of new equipments and setup of biochemical assays.
The project success relies on the long tradition of ICMAN on fish larvae physiology/nutrition researches, the
great experience of the supervisor, the high quality of facilities at ICMAN, and the previous research
experience of the candidate, including his capacity to incorporate new techniques and methodologies. Two
important points that strengthen the feasibility and credibility of the project are that the principal objective
and the specific goals are clearly identified, and that the research methodology is plainly applicable.
Other important point is that this research is designed in a way that many samples (for accomplishing
different tasks) can be taken from single experiments. This allows direct comparisons among very different
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set of data (i.e. growth, biochemical, molecular, etc.) as corresponding to the same experimental conditions
(diet, time, etc.) facilitating the integration of results. Also, this kind of design is in line with the time frame
of Marie Curie actions of two years.
Work plan:
Time (Months)
Tasks 1-3 4-6 7-9 10-12 13-15 16-18 19-21 22-24
Accommodation, administrative
tasks, equipment and consumables
acquisition, training in fish larvae
X
rearing, bibliography survey
Setup of analytical techniques X X X
Bioassays: effects of early feeding X X
Analytical processing of samples X X X X
Integrative analysis of results X X X
Scientific publications writing X X X X
Management and dissemination X X X X X X X X
Submit final report X
Milestones:
• Accommodation, administrative tasks, equipment and consumables acquisition, training in fish larvae
rearing, bibliography survey: Accommodation and administrative tasks. More deep review of the state of
the art in the field: research methodology adjusted if needed. Training of the candidate in S. aurata larvae
rearing procedures, auxiliary cultures and larvae management. Microdiets manufacture. Time for a
preliminary set-up of the bioassay and sampling exercise for biological materials acquisition for set-up of
analytical techniques. Purchase of equipments (electrophoresis unit, blotting, visible and fluorescence
kinetic microplate reader, software, etc.) and reagents (antibodies, enzyme substrates, etc.).
• Setup of analytical techniques: Kinetic assays, zymography, immunohistochemistry, blotting, qPCR,
DGGE.
• Bioassays-effects of early feeding: Development of the bioassay according to experimental design.
• Analytical processing of samples: Analytical work and data processing.
• Integrative analysis of results: Integration of results, proper design of publications, and writing.
• Management and dissemination: Dissemination of results. Submit final report.
No results will be susceptible to protection. All relevant findings will be distributed through publications,
meetings and/or communications as soon as possible. In the articles and other works, it will be highlighted
the support and funding of Marie Curie.
B 4.4. Practical and administrative arrangements and, support for the hosting of the fellow
Candidate’s accommodation will be arranged prior to his arrival through accommodation office of the
ICMAN. The candidate will be introduced to all the relevant colleagues and sections in the ICMAN. He will
be explained with all the rules and regulations (including safety aspects). The candidate will be allowed to
use all the ICMAN facilities (i.e. library, laboratories, email system, etc.) and he will be included in the mail
circulation list of the ICMAN. Access to proper computing facilities and bench space will be provided. He
will participate at the regular science meetings organized within the ICMAN (including those with more
general, multi-disciplinary content). ICMAN will ensure that the candidate is covered under the appropriated
social security scheme. Also, regular meetings with the supervisor will ensure that he gets all the necessary
facilities for the project and feels at ‘home’. The location of ICMAN, Cadiz, is a city where the welfare and
entertainment of visitor is ensured, due to a privileged weather, a very active cultural life, its Mediterranean
cuisine, and its friendly people.
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B 5. IMPACT
B 5.1. Potential for creating long term collaborations and mutually beneficial co-operation between
Europe and the other Third Country
Both the candidate and the supervisor of this proposal have as the main research interest the digestive
physiology of marine organism and their regulatory mechanisms, especially in the context of applied
aquaculture. Both are interested in apply novel approaches and use up-to-date technologies to solve
biological industry-related problems, like those related with the feeding technology for different marine
species. These common research interests constitute a good starting point for a fruitful collaboration between
ICMAN and the Aquaculture Department of the Center for Marine Research at the University of Havana in
Cuba. The position of the candidate within the Cuban marine science scientific community (Head of
Department, recognition in the field, supervisor of M.Sc. and Ph.D. students, etc.) will facilitate the
continuity of this collaboration. The approval of this present proposal certainly will speed up the
establishment of new collaborations. The candidate has collaborated in the past with other Spanish academic
institutions (i.e. University of Almeria, University of Cadiz) with good results in terms of scientific output,
and he is currently arranging a new collaboration with the Alfred Wegener Institute, Bremerhaven, Germany,
in the field of digestive enzymes of marine organisms.
It is also important to remark the possibility for further collaboration with Cuba. Cuba has a long tradition in
aquaculture and aquaculture research, but mainly based on marine crustaceans and freshwater fishes, being
marine aquaculture negligible. However, the country has a great potential for the development of marine
aquaculture due to high seawater temperature all year round and the presence of species suitable for marine
aquaculture. The establishment of long-term collaborations will be of a great importance for marine fish
aquaculture development in Cuba mainly in terms of building capacities.
B 5.2. Contribution to European excellence and European competitiveness through valuable transfer
of knowledge
This project is going to apply a novel approach to an old need of the European and world aquaculture
industries. This project will look for new avenues (programming, in its wider sense) for advance to higher
level of plant protein inclusion in diet without impacting fish performance and wellbeing, using one of the
most important fish species cultured in Europe (S. aurata) as a model organism. Together with European
advances already made in larval rearing technologies and European ongoing studies on the use of alternative
protein sources (i.e. soybean), the scientific and technological advances that could be obtained with this
project will not only benefit the Mediterranean aquaculture sector, but will strengthen the European lead at a
larger geographical scale. This project deals with fundamental physiological issues and then, obtained results
can be corroborated further in other important European cultured fishes. Taking advance of the already
established ICMAN collaborations with the most prominent European scientific institutions devoted to fish
aquaculture, this project will then promote exchanges of knowledge and know-how. Also, it is highly
convenient that results of this study will be available (published) around at the same time that those of
ongoing researches at the European scale on fish nutrition, because it will allows a rapid integration of novel
results and the identification of future research lines and collaborations.
The competitiveness of the Mediterranean aquaculture industry will be considerably improved by the
developments foreseen in the project. Through the increased use of sustainable and cost-effective feed
ingredients, more environmentally friendly, cost effective and safe products could be produced and
marketed. Although it is difficult to evaluate precisely the economic gain for the industry, farmers could
exploit and enlarge the range of fish larvae managements to increase the use of soybean or sunflower meal in
later culture stages, and therefore, capitalize on premium prices already existing in aquaculture and other
livestock production.
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This project proposal is intended to study an issue that has attracted the attention of the aquaculture and
scientific sectors for decades, but using a novel approach (nutritional programming). Thus, it is expected that
result will have a high impact on the scientific community devoted to the fish nutrition/physiology, and that
results will attain good citation rates soon after publication. Results emerging from the project will also be of
interest to academia in Europe and throughout the world. In the short term, results will be included in
specialization courses in which ICMAN and the supervisor of this proposal are involved (Master of doctorate
on fisheries technology “Acuipesca” by University of Cadiz in Spain, and the international Training School
on fish larvae biology and rearing by the European net Larvanet).
On the other hand, farmers and the food industry will receive information on new possibilities for increasing
fish meal replacement in aquafeeds by mean of the publication of main achievements of this project in
technical journals related with the topic (i.e. AquaFeeds, Aquaculture Europe, etc.). At a later stage in the
project, when fish of the different treatments have attain a reasonable size, regional and local fish farmers
will be invited to visit the ICMAN facilities. This will encourage a direct transfer of the most interesting
technological results to the industry by showing that the results produced by the project are applicable.
Special attention will be devoted to make the research activities and main results available to the general
public through the following outreach activities:
a) The project, and later the more significant findings, will be presented at web sites of Aquaculture diffusion
(FOESA, Mis peces, etc.). Information released this way will be aimed to create awareness in the general
public about the underway study, its importance for a more sustainable aquaculture industry, and its
relationship with past and current European efforts in the field, as well as the impact of Marie Curie Actions.
b) Articles will be produced in at least one local newspaper to provide the media with an opportunity to meet
with researchers and inform the wider public about this project results.
c) Given the close location of ICMAN respect to the University of Cadiz, main achievement of the project
will be use to talk to early students about current challenge of the European and local aquaculture industries,
and the different research approaches needed to cope sustainability. The candidate will look for the different
activities with student to work for develop their motivation to embrace research careers. The success of this
outreach activity is highly dependent on more than 10 years of expertise of the candidate in teaching
activities at the University of Havana in Cuba, including at under-and post-graduated levels.
d) Activities with early students at the University of Cadiz will be complemented with at least one visit to the
aquaculture facilities at ICMAN, for the students to corroborate the information previously received. This
activity is expected to make students familiar with a “researcher regular day” and to have a great impact on
their preference toward aquaculture research.
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B 6. ETHICS ISSUES
There are no special ethical issues associated with this project. This study will use fish larvae, which are
considered plankton. However, all project activities will be undertaken within the clear boundaries of
national and EU legal frameworks, specifically those relating to animal welfare (i.e. Directive 86-609-EEC).
Additionally, ICMAN facilities are licensed for performing experimentation on aquatic animals according to
the Spanish legislation (RD1201/2005, royal law for the protection of animals used in scientific
experiments). ICMAN animal husbandry services are registered as 36271-42-A and ES110280000311
respectively, and all the experiments with fish have to be approved by the ICMAN “Comité de Ética y
Bienestar Animal”. Larval experimentation requires the use of a high number of larvae (about 100 000 in
each experiment). The estimated number of larvae needed for this project is around 200 000. In all cases,
larvae will be anesthetized before their use for analysis; there are no alternative procedures.
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ENDPAGE
PEOPLE
MARIE CURIE ACTIONS
Call: FP7-PEOPLE-2012-IIF
PART B
“FishPROG”
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