INDEX
S. No NAME OF THE PROGRAM PAGE NO
1 CONTROLS AND FUNCTIONS
2 STRING AND ARRAYS
3 GENERATE AND DISPLAY GRADE
4 STUDENT REGISTRATION FORM
5 MATH FUNCTION
6 COOKIES
7 DISPLAY STUDENT INFORMATION USING
MYSQL TABLE
8 GENBAK USING BIOPERL
9 COMPARE SEQUENCES AND FIND MUTATION
USING BIOPERL
10 SIMULATE DNA MUTATION
11 PROTEIN SEQUENCE GENERATION
12 DNA FRAGMENTS TRANSCRIPTION : DNA TO
RNA
Department of Computer Science Page 1
Ex: No- 1 CONTROL AND FUNCTIONS
AIM : Develop a PHP program using controls and functions
ALGORITHM :
STEP 1: Start the process
STEP 2: Go to the editor for coding the controls and functions programs in PHP
STEP 3: Program code starts with opening and closing tag for PHP
programming
STEP 4: create the variables and assign values to the them
STEP 5: using control statements find the biggest among two variables
STEP 6: create another block of statements for favourite site using switch
statement
STEP 7: print values and run the local host using browser
STEP 8: Execute the program.
STEP 9: Display the result.
STEP 10: Stop the process
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PROGRAM :
<?php
$first_number=7;
$second_number=21;
if($first_number>$second_number){
echo"$first_number is greater than $second_number";
else
echo"$second_number is greater than $first_number";
$favorite_site='code';
switch($favorite_site){
case'business':
echo"myfavorite site is business.tutsplus.com";
break;
case'code':
echo"myfavorite site is code.tutsplus.com";
break;
case'web design':
echo"myfavorite site is web design.tutsplus.com";
break;
case'music':
echo"myfavorite site is music.tutsplus.com";
break;
case'photography':
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echo"myfavorite site is photography.tutsplus.com";
break;
default:
echo"i like everything in tutsplus.com!";
$max=0;
echo $i=0;
echo",";
echo $j=1;
echo",";
$result=0;
while($max<10)
$result=$i+$j;
$i=$j;
$j=$result;
$max=$max+1;
echo $result;
echo",";
?>
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OUTPUT :
RESULT : The program is executed and verified successfully
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Ex: No- 2 STRING AND ARRAYS
AIM: To Develop a PHP program to implement the concept of String and arrays
ALGORITHM:
STEP 1: Start the process
STEP 2: Go to the editor for creating the associative array and strings program
in PHP
STEP 3: Program code starts with opening and closing tag for PHP
programming
STEP 4: input associative array with necessary values
STEP 5: print the associative array using echo statement
STEP 6: save the PHP program in the server
STEP 7: Run the local host using browser and call the program
STEP 8: stop the process
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PROGRAM:
<html>
<head>
<title>associative array</title>
</head>
<body>
<?php
$marks=array(
"mohammad"=>array(
"physics"=>35,
"maths"=>30,
"chemistry"=>39
),
"qadir"=>array(
"physics"=>30,
"maths"=>32,
"chemistry"=>29
),
"zara"=>array(
"physics"=>31,
"maths"=>22,
"chemistry"=>39
);
echo"marks for mohammad in physics:";
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echo $marks['mohammad']['physics']."<br/>";
echo"marks for mohammad in maths:";
echo $marks['mohammad']['maths']."<br/>";
echo"marks for mohammad in chemistry:";
echo $marks['mohammad']['chemistry']."<br/>";
echo"the total marks of mohammad:";
echo $marks['mohammad']['physics']+$marks['mohammad']['maths']+
$marks['mohammad']
['chemistry']."<br/>";
echo"<br/>";
echo"marks for qaduir in physics:";
echo $marks['qadir']['physics']."<br/>";
echo"marks for qadir in maths:";
echo $marks['qadir']['maths']."<br/>";
echo"marks for qadir in chemistry:";
echo $marks['qadir']['chemistry']."<br/>";
echo"the total marks of qadir:";
echo $marks['qadir']['physics']+$marks['qadir']['maths']+$marks['qadir']
['chemistry']."<br/>";
echo"<br/>";
echo"marks for zara in physics:";
echo $marks['zara']['physics']."<br/>";
echo"marks for zara in maths:";
echo $marks['zara']['maths']."<br/>";
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echo"marks for zara in chemistry:";
echo $marks['zara']['chemistry']."<br/>";
echo"the total marks of zara:";
echo $marks['zara']['physics']+$marks['zara']['maths']+$marks['zara']
['chemistry']."<br/>";
echo"<br/>";
?>
</body>
</html>
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OUTPUT:
RESULT: The program is executed and verified successfully
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Ex: No- 3 GENERATE AND DISPLAY A GRADE
AIM: Develop a PHP program to generate and display a grade.
ALGORITHM:
STEP 1: Start the process
STEP 2: Go to the editor for coding the grade displaying programs in PHP
STEP 3: Program code starts with opening and closing tag for PHP
programming
STEP 4: create a form using html tags and create a table with fields student
name Marks for physics, chemistry and maths
STEP 5: check the input element is set or not using set() function
STEP 6: Add necessary fields and access value from each text field
STEP 7: Find the total marks and set the appropriate grade format using if
statement
STEP 8: Print the values using echo statement
STEP 9: save the app PHP coded program in server
STEP 10: print values and run the local host using browser
STEP 11: stop the process
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PROGRAM :
<html>
<body>
<form action="" method="post">
<center>
<table border=0>
<tr>
<td>
Student Name
</td>
<td>
<input type=text name="t1">
</td>
</tr>
<tr>
<td>
Marks for Physics
</td>
<td>
<input type=text name="t2">
</td>
</tr>
<tr>
<td>
Marks for Chemistry
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</td>
<td>
<input type=text name="t3">
</td>
</tr>
<tr>
<td>
Marks for Math
</td>
<td>
<input type=text name="t4">
</td>
</tr>
</table>
<br>
<br>
<input type=submit name="s" value="Result">
</center>
<?php
if(isset($_POST['s']))////checking whether the input element is set or not
$a=$_POST['t1'];//accessing value from 1st text box
$a1=$_POST['t2'];//accessing value from 2nd text field
$a2=$_POST['t3'];//accessing value from 3rd text field
$a3=$_POST['t4'];//accessing value from 4th text field
$sum=$a1+$a2+$a3;
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$avg=$sum/3;
if($avg>=0&&$avg<=50)
$grade="Fail";
if($avg>=50&&$avg<=70)
$grade="C";
if($avg>=70&&$avg<=80)
$grade="B";
if($avg>=80&&$avg<=90)
$grade="A";
if($avg>90)
$grade="E";
echo "<br>";
echo "<font size=4><center>Student is:-".$a."</center><br>";
echo "<font size=4><center>Total marks:-
".$sum."</center><br>";
echo "<font size=4><center>Grade is:-".$grade."</center>";
?>
</form>
</body>
</html>
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OUTPUT :
RESULT: The program is executed and verified successfully
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Ex: No- 4 STUDENT REGISTRATION FORM
AIM: Develop a PHP program to display student registration form
ALGORITHM:
STEP 1: Start the process
STEP 2: Go to the editor for coding the student registration details
STEP 3: Program code starts with opening and closing tag for PHP
programming
STEP 4: create a student registration form using form method
STEP 5: use field set tag for inserting fields to form
STEP 6: use legend tag function to insert student details
STEP 7: use the input type function to submit the entered the details
STEP 8: save the app PHP coded program in server
STEP 9: Run the local host using the browser and calls the program
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PROGRAM :
<html>
<head>
<title>Student Registration | PHP</title>
</head>
<body>
<div>
<?php
if(isset($_POST['create']))
echo 'Student details submitted.';
?>
</div>
<div>
<form action="registration.php" method="post">
<div class="container">
<h1>Registration</h1>
<p>Fill up the form with correct values.</p>
<label for="regno"><b>Reg no</b></label>
<input type="text" name="regno" required>
<label for="name"><b>Student Name</b></label>
<input type="text" name="name" required>
<label for="addr"><b>Address</b></label>
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<input type="text" name="addr" required>
<label for="email"><b>E-Mail</b></label>
<input type="text" name="email" required>
<label for="phonenumber"><b>Phone number</b></label>
<input type="text" name="phonenumber" required>
<input type="submit" name="create" value="Submit">
</div>
</form>
</body>
</html>
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OUTPUT:
RESULT : The program is executed and verified successfully .
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Ex: No- 5 MATH FUNCTIONS
AIM: Develop a PHP program to demonstrate Math functions.
ALGORITHM:
STEP 1: Start the process
STEP 2: Go to the editor for math function coding in PHP
STEP 3: Program code starts with opening and closing tag for PHP
programming
STEP 4: create a math form using form method
STEP 5: Use field set tag for inserting fields to form
STEP 6: Use legend tag function to insert student details
STEP 7: Use the input type function to submit entered details
STEP 8: Save the app PHP coded program in server
STEP 9: Run the local host using the browser and calls the program
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PROGRAM:
<?php
$marks1=array(360,310,310,330,313,375,456,111,256);
$marks2=array(350,340,356,330,321);
$marks3=array(630,340,570,635,434,255,298);
$max_marks = max(max($marks1),max($marks2),max($marks3));
$min_marks = min(min($marks1),min($marks2),min($marks3));
echo"Maximummarks : ",$max_marks."\n";
echo"Minimummarks : ",$min_marks."\n";
echo round( 1.65,1, PHP_ROUND_HALF_UP)."\n";
echo round( 1.65,1, PHP_ROUND_HALF_DOWN)."\n";
echo round( -1.54,1, PHP_ROUND_HALF_EVEN)."\n";
$val='4.5e3';
$ival=(int) $val;
$fval=(float) $val;
echo $ival,"\n";
echo $fval,"\n";
$odate="2012-09-12";
$newDate=date("d-m-y",strtotime($odate));
echo $newDate,"\n";
?>
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OUTPUT:
RESULT: The program is executed and verified successfully .
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Ex. No – 6 COOKIES
Aim: To develop PHP Program Using Cookies
Algorithm:
STEP 1: Start the process
STEP 2: Go to the editor for coding the cookie program in PHP
STEP 3: Program code starts with opening and closing tag for PHP
programming
STEP 4: create 3 different documents to set and get the cookie
STEP 5: use input type function to perform operations like read and delete
cookies
STEP 6: Print the values using echo statement
STEP 7: save the app PHP coded program in server
STEP 8: Run the local host using the browser and calls the program
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PROGRAM:
Phpsetcookie.php
<html>
<head>
<title>cookies</title>
<?php
setcookie("messages","No Worries for 30 days(cookie is set)",time()+3600);
?>
</head>
<body>
<h1>
seting a cookie
</h1>
The Cookie was set.
<form action="phpgetcookie.php">
<input type="submit" value="read cookies">
</form></body></html>
Phpgetcookie.php
<html>
<head><title>cookies</title>
</head>
<body>
<h1>
Reading a cookie </h1>
The cookie says:
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<?php
if(isset($_COOKIE['message']))
echo $_COOKIE['MESSAGE'];
?>
<form action="setcookie.php">
<input type="submit" value="delete cookies">
</form>
</body>
</html>
Setcookie.php
<html>
<head>
<title>cookies</title>
<?php
setcookie("message"," ",time()-3600);
?>
</head>
<body>
<h1> cookie was deleted.</h1>
<form action="phpgetcookie.php">
<input type="submit" value="back">
</form>
</body></html>
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OUTPUT:
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RESULT: The program is executed and verified successfully
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Ex: No- 7 STUDENT INFORMATION USING MYSQL TABLE
AIM: Develop a PHP program to display student information using MYSQL
table
ALGORITHM:
STEP 1: Start the process
STEP 2: Go to the editor for coding the student information program in PHP
STEP 3: Program code starts with opening and closing tag for PHP
programming
STEP 4: create a student registration form using form method
STEP 5: use field set tag for inserting fields to form
STEP 6: use legend tag function to insert student details
STEP 7: use the input type function to submit the entered the details
STEP 8: save the app PHP coded program in server
STEP 9: Run the local host using the browser and calls the program
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PROGRAM :
Student.php
<html>
<head>
<title>database</title>
</head>
<body>
<form action="student.php"method="POST">
ID:<input type="text" name="c"><br><br>
Name:<input type="text" name="a"><br><br>
City:<input type="text" name="b"><br><br>
<input type="submit"name="insert"value="INSERT">
<input type="submit"name="update"value="UPDATE">
<input type="submit"name="delete"value="DELETE">
</form>
</body>
</html>
Student.php
<html>
<head>
<title>database</title>
</head>
<body>
<?php
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if(isset($_POST['insert']))
$X=$_POST['c'];
$y=$_POST['a'];
$z=$_POST['b'];
$con=mysql_connect("localhost","root","");
mysql_select_db("prabu",$con);
mysql_query("insert into mini values('$x','$y','$z')");
echo"Row inserted";
if(isset($_POST['update']))
$X=$_POST['c'];
$y=$_POST['a'];
$z=$_POST['b'];
$con=mysql_connect("localhost","root","");
mysql_select_db("prabu",$con);
mysql_query("update mini set name='$y',place='$z'where id='$x'");
echo"Row updated";
if(isset($_POST['delete']))
$x=$_POST['e'];
$con=mysql_connect("localhost","root","");
mysql_select_db("prabu",$con);
mysql_query("delete from mini where id='$x'");
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echo"Row deleted";
?>
</body>
<html>
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OUTPUT:
RESULT: The program is executed and verified successfully
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Ex: No- 8 IMPORTING DATA FROM GENBANK USING BIOPERL
AIM: To write a script to import data from genbank using bioperl.
ALGORITHM:
STEP 1: Start the process.
STEP 2: Using Bio:: DB::Genbank import sequence from Genbank.
STEP 3: Get the sequence of (AF303112) in seq1 and trunk it in seq2 Using trunc(1, 200)
STEP 4: Print the seq2
STEP 6: Stop the process.
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CODING
:#!/local/bin/perl -w
use Bio::DB::GenBank;
$gb = new Bio::DB::GenBank();
$seq1 = $gb->get_Seq_by_acc('AF303112');
$seq2=$seq1->trunc(1, 200);
print $seq2->seq(), "\n";
exit;
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OUTPUT:
GENBANK/AF303112
GENBANK/AY050559
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RESULT: The program is executed and verified successfully
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Ex: No- 9 COMPARE SEQUENCE AND FIND MUTATION USING BIOPERL
AIM: To write a script to use sequence feature to compare sequence and find mutation using bioperl.
ALGORITHM:
STEP 1: Start the process.
STEP 2: Using file::path print the filename and open.
STEP 3: Declare sub mutate to get the current base and new base of DNA.
STEP 4:’ Do’ function is used to get the new base.
STEP 5: Print the file name to getting the sequence which is compared and mutant.
STEP 6: Stop the process
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Coding :
use File::Path;
print "\n\t MUTATION OF DNA\n\n";
print "ENTER THE FILENAME OF THE DNA SEQUENCE: ";
$dnafilename = <STDIN>;
chomp $dnafilename;
unless (open(DNAFILE, $dnafilename) )
print "Cannot open file \"$dnafilename\"\n\n";
goto h;
my $DNA = <DNAFILE>;
close DNAFILE;
my $i;
my $mutant;
$mutant = mutate($DNA);
print "Mutate DNA\n\n";
print "THE ORIGINAL DNA SEQUENCE:\n";
print "$DNA\n\n";
print "THE MUTANT DNA SEQUENCE:\n";
print "$mutant\n\n";
print "THE 15 SUCCESSIVE MUTATIONS ARE:\n\n";
for ($i=0 ; $i < 15 ; ++$i)
$mutant = mutate($mutant);
print "$mutant\n";
print WRITE "$mutant\n";
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}
sub mutate
my($dna) = @_;
my($position) = randomposition($dna);
my $current_base = substr($dna, $position, 1);
my $newbase;
do
$newbase = randomnucleotide();
until ($newbase ne $current_base);
substr($dna,$position,1,$newbase);
return $dna;
subrandomposition
my($string) = @_;
returnint rand length $string;
subrandomelement
my(@array) = @_;
return $array[rand @array];
subrandomnucleotide
my(@nucleotides) = ('A', 'C', 'G', 'T');
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returnrandomelement(@nucleotides);
use File::Path;
print "\n\t MUTATION OF DNA \n\n";
print "ENTER THE FILENAME OF THE DNA SEQUENCE:= ";
$dnafilename = <STDIN>;
chomp $dnafilename;
unless ( open(DNAFILE, $dnafilename) )
print "Cannot open file \"$dnafilename\"\n\n";
goto h;
my $DNA = <DNAFILE>;
close DNAFILE;
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OUTPUT:
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RESULT: The program is executed and verified successfully
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Ex. No – 10 SIMULATE DNA MUTATIONS
AIM: Write a Script to Simulate DNA Mutations
ALGORITHM:
Step 1: Start the Program.
Step 2: Create a new folder in Perl Folder.
Step 3: Open Notepad and type the program.
Step 4: Save the program as 1DNASequence.pl in the folder which is created
in Perl.
Step 5: Run the program in Command Prompt as Perl 1DNASequence.pl.
Step 6: Stop the program.
Steps Using Tools:
1. Search NCBI in the Google.
2. Select the nucleotide sequence link.
3. Enter the scientific name of the organism and search. Bioperl
Programming Language
4. Select the FASTA link.
5. Copy the sequence and save the sequence in the notepad.
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PROGRAM
#! /usr/bin/perl -w
# Storing DNA in a variable, and printing it out
# First we store the DNA in a variable called $DNA
$DNA = 'ACGGGAGGACGGGAAAATTACTACGGCATTAGC';
# Next, we print the DNA onto the screen
print $DNA;
# Finally, we'll specifically tell the program to exit.
Exit;
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OUTPUT
RESULT: The program is executed and verified successfully
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Ex. No – 11 PROTEIN SEQUENCE GENERATION
Aim: Write a Script for Protein Sequence generation
Steps Using Tools:
1. Search Expasy tool in theGoogle.
2. Click the Proteomicscolumn.
3. Under the databases, click UniProtKBlink.
4. Copy the protein sequence in the textfile.
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RESULT: Thus the protein sequence is generated successfully.
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Ex. No – 12 CONCATENATING DNA FRAGMENTS TRANSCRIPTION :
DNA TO RNA
AIM: To write a script to transcription of DNA to RNA using bioperl.
ALGORITHM:
STEP 1: Start the process.
STEP 2: Using bio::seq and bio::seqIO get the DNA sequence.
STEP 3: Declare DNA1 and DNA2 to store DNA fragments and print.
STEP 4: Transcribe the DNA to RNA by substituting all T’s with U’s .
STEP 5: Print the RNA onto the screen.
STEP 6: Stop the process.
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PROGRAM:
#!/usr/bin/perl -w
# Transcribing DNA into RNA
print"Transcribing DNA into RNA\n";
print"*************************\n\n";
# The DNA
$DNA = 'ACGGGAGGACGGGAAAATTACTACGGCATTAGC';
# Print the DNA onto the screen
print "Here is the starting DNA:\n\n";
print "$DNA\n\n";
# Transcribe the DNA to RNA by substituting all T's with U's.
$RNA = $DNA;
$RNA =~ s/T/U/g;
# Print the RNA onto the screen
print "Here is the result of transcribing the DNA to RNA:\n\n";
print "$RNA\n";
# Exit the program.
exit;
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OUTPUT:
RESULT: The program is executed and verified successfully
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