Tools and database of NCBI

Tools and database of NCBI

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  Subject:- computational Biology Presentationon Supervised by- Dr. Bibhudutta Mishra Presented by- IPSITA SAHOO Reg. no- 200705180160
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  CONTENTS NCBI • Home page •About Tools and database of NCBI • BLAST • Types of BLAST • Home page • Databases References
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   NCBI standsfor “National Center for Biotechnology Information”  It is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH).  It is approved and funded by the government of the United States.  The NCBI is located in Bethesda, Maryland and was founded in 1988 through legislation sponsored by US Congressman Claude Pepper.  The NCBI houses a series of databases relevant to biotechnology and biomedicine and is an important resource for bioinformatics tools and services.  Major databases include GenBank for DNA sequences and PubMed, a bibliographic database for biomedical literature. Other databases include the NCBI Epigenomics database. All these databases are available online through the Entrez search engine. NCBI
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  Home page ofNCBI
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  Tools and Databasesof NCBI
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  Home page ofBLAST
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  Nucleotide database- The Nucleotidesequence database is a collection of sequences from GenBank, RefSeq, and Third Party Annotation (TPA). Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery. Protein sequence database- The Protein sequence database is a collection of data from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. Structural databases- Structural databases are essential tools for all crystallographic work and often need to be consulted at several stages of the process of producing, solving, refining and publishing the structure of a new material. OMIM - Online Mendelian Inheritance in Man- OMIM is a comprehensive, authoritative compendium of human genes and genetic phenotypes that is freely available and updated daily. OMIM is authored and edited at the McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, under the direction of Dr. Ada Hamosh. Its official home is omim.org. Some databases of NCBI
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   My subjectteacher: Mr. Bibhudutta Mishra  Dr. Yashaswi Nayak, HoD and Dean SoAS  All the Faculty members of Department of Zoology, School of Applied sciences, CUTM  Family and friends Acknowledgements Reference National Center for Biotechnology Information (US). (2013). The NCBI handbook. National Center for Biotechnology Information (US).