Fixed quotes

Signed-off-by: gzitzlsb-nv <gzitzlsberge@nvidia.com>

Signed-off-by: atalhens <sneh.lata@nutanix.com>

…range when given subtraction (#31)

* Fix #27 (#28)

Signed-off-by: atalhens <sneh.lata@nutanix.com>

* Fix #29

Signed-off-by: atalhens <sneh.lata@nutanix.com>

* Revert "Fix #29"

This reverts commit 80e02dc.

Signed-off-by: atalhens <sneh.lata@nutanix.com>

* Fix #29 Update config

Signed-off-by: atalhens <sneh.lata@nutanix.com>

* Fix #29

Signed-off-by: atalhens <sneh.lata@nutanix.com>

---------

Signed-off-by: atalhens <sneh.lata@nutanix.com>

* Fix #32 Add a check to ensure empty input is not passed

Signed-off-by: atalhens <sneh.lata@nutanix.com>

* Add str constant for output message

Signed-off-by: atalhens <sneh.lata@nutanix.com>

* Add unit test

Signed-off-by: atalhens <sneh.lata@nutanix.com>

---------

Signed-off-by: atalhens <sneh.lata@nutanix.com>

Signed-off-by: Andrey Voroshilov <avoroshilov@nvidia.com>

* First pass at adding issue templates, and rapids bots

Signed-off-by: David Gardner <dagardner@nvidia.com>

* Fix team name

Signed-off-by: David Gardner <dagardner@nvidia.com>

* Fix team name

Signed-off-by: David Gardner <dagardner@nvidia.com>

* First pass at a minimal CI for a PR

Signed-off-by: David Gardner <dagardner@nvidia.com>

* add ops-bots.yaml

Signed-off-by: Christopher Harris <xixonia@gmail.com>

* rename ops-bot.yaml -> ops-bots.yaml

Signed-off-by: Christopher Harris <xixonia@gmail.com>

* rename ops-bots.yaml -> ops-bot.yaml

Signed-off-by: Christopher Harris <xixonia@gmail.com>

---------

Signed-off-by: David Gardner <dagardner@nvidia.com>
Signed-off-by: Christopher Harris <xixonia@gmail.com>
Co-authored-by: Christopher Harris <xixonia@gmail.com>

This PR aims to improve the clarity of progress reporting when evaluators run in parallel by introducing a simple tqdm position registry and integrating it across multiple evaluator modules.

Added TqdmPositionRegistry to manage progress bar positions.
Updated trajectory and RAG evaluators to use the registry for clearer progress display.
Wrapped workflow execution with progress bar updates for overall evaluation tasks.
```
Evaluating Ragas nv_context_relevance: 100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 6/6 [00:11<00:00,  1.85s/it]
Evaluating Ragas nv_response_groundedness: 100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 6/6 [00:12<00:00,  2.10s/it]
Evaluating Ragas nv_accuracy: 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 6/6 [00:13<00:00,  2.19s/it]
Evaluating Trajectory: 100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 6/6 [00:12<00:00,  2.05s/it]
```

Authors:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

Approvers:
  - Yuchen Zhang (https://github.com/yczhang-nv)

URL: #38

* Create basic CI pipeline
* Add "subpackage" to vale vocabulary
* Skip broken tests (#50)
* Update `tests/aiq/eval/trajectory_evaluator/test_trajectory_evaluate.py` to perform a rounded equivalency test.

Closes #44


## By Submitting this PR I confirm:
- I am familiar with the [Contributing Guidelines](https://github.com/NVIDIA/AgentIQ/blob/develop/docs/source/advanced/contributing.md).
- We require that all contributors "sign-off" on their commits. This certifies that the contribution is your original work, or you have rights to submit it under the same license, or a compatible license.
  - Any contribution which contains commits that are not Signed-Off will not be accepted.
- When the PR is ready for review, new or existing tests cover these changes.
- When the PR is ready for review, the documentation is up to date with these changes.

Authors:
  - David Gardner (https://github.com/dagardner-nv)

Approvers:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

URL: #46

This PR cleans up the GitLab CI pipeline by removing the outdated trigger stage and references, as well as cleaning up the variable used for the artifactory upload.

Dropped the "trigger" stage from the stages list.
Removed the associated trigger job script and rules from the pipeline.

Authors:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

Approvers:
  - David Gardner (https://github.com/dagardner-nv)

URL: #54

Authors:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

Approvers:
  - Yuchen Zhang (https://github.com/yczhang-nv)

URL: #55

@mdemoret-nv `res` sometimes contains the `categories` field `=None`

Causing a pydantic validation exception sometimes

Authors:
  - Bruno Alvisio (https://github.com/balvisio)

Approvers:
  - Michael Demoret (https://github.com/mdemoret-nv)

URL: #22

* Store CI artifacts: test results, wheels, and documentation
* Switch to using the uv containers, these are smaller and contain more of what we need and less of what we don't.
* Fix CI runs on `develop` and `main` branches.

## By Submitting this PR I confirm:
- I am familiar with the [Contributing Guidelines](https://github.com/NVIDIA/AgentIQ/blob/develop/docs/source/advanced/contributing.md).
- We require that all contributors "sign-off" on their commits. This certifies that the contribution is your original work, or you have rights to submit it under the same license, or a compatible license.
  - Any contribution which contains commits that are not Signed-Off will not be accepted.
- When the PR is ready for review, new or existing tests cover these changes.
- When the PR is ready for review, the documentation is up to date with these changes.

Authors:
  - David Gardner (https://github.com/dagardner-nv)

Approvers:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

URL: #56

* Add version number to the documentation title
* Add `-W` flag to `sphinx-build` treating warnings as errors.
* Remove performance hack, instead just set `-j 4` (instead of auto).
* Remove unused `sphinx-build` flags
* `linkcheck` is now it's own make target

Authors:
  - David Gardner (https://github.com/dagardner-nv)

Approvers:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

URL: #24

As mentioned in [#39](#39), `platformdirs` should be included as a dependency of `AgentIQ` core component. 

This issue does not occur when installing from source since `uv.lock` already includes `platformdirs`. However, the `pypi` package does not include `uv.lock` (and causes the missing dependency issue).

Closes #39 (the `pypi` package needs to be updated)

## By Submitting this PR I confirm:
- I am familiar with the [Contributing Guidelines](https://github.com/NVIDIA/AgentIQ/blob/develop/docs/source/advanced/contributing.md).
- We require that all contributors "sign-off" on their commits. This certifies that the contribution is your original work, or you have rights to submit it under the same license, or a compatible license.
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- When the PR is ready for review, new or existing tests cover these changes.
- When the PR is ready for review, the documentation is up to date with these changes.

Authors:
  - Yuchen Zhang (https://github.com/yczhang-nv)

Approvers:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

URL: #62

… does not exist (#63)

This issue occurs when the parent directory of `AIQ_CONFIG_DIR` does not exist. Should use `os.makedirs` with `exist_ok=True` to create parent directories when necessary.

Closes #40 

## By Submitting this PR I confirm:
- I am familiar with the [Contributing Guidelines](https://github.com/NVIDIA/AgentIQ/blob/develop/docs/source/advanced/contributing.md).
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- When the PR is ready for review, new or existing tests cover these changes.
- When the PR is ready for review, the documentation is up to date with these changes.

Authors:
  - Yuchen Zhang (https://github.com/yczhang-nv)

Approvers:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

URL: #63

Closes #43 

## By Submitting this PR I confirm:
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Authors:
  - David Gardner (https://github.com/dagardner-nv)

Approvers:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

URL: #61

Closes

## By Submitting this PR I confirm:
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- When the PR is ready for review, the documentation is up to date with these changes.

Authors:
  - Eric Evans II (https://github.com/ericevans-nv)
  - David Gardner (https://github.com/dagardner-nv)
  - Yuchen Zhang (https://github.com/yczhang-nv)

Approvers:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

URL: #64

Allow arg list to be extendable while checking for the mandatory args
Closes #50

## By Submitting this PR I confirm:
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- When the PR is ready for review, the documentation is up to date with these changes.

Authors:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

Approvers:
  - Yuchen Zhang (https://github.com/yczhang-nv)

URL: #68

Improves readability of the Nested Stack Analysis Gantt chart by using relative timestamps instead of epoch timestamps.


Normalized the timeline by subtracting the minimum start time from each bar's position and setting the x-axis limit accordingly. This ensures a clearer and more consistent visualization of nested call durations.


## By Submitting this PR I confirm:
- I am familiar with the [Contributing Guidelines](https://github.com/NVIDIA/AgentIQ/blob/develop/docs/source/advanced/contributing.md).
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Authors:
  - Dhruv Nandakumar (https://github.com/dnandakumar-nv)

Approvers:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)
  - Yuchen Zhang (https://github.com/yczhang-nv)
  - David Gardner (https://github.com/dagardner-nv)

URL: #70

* Adds a `ci/scripts/run_ci_local.sh` script allowing for executing CI scripts locally mirroring the GHA CI pipeline as closely as possible.
* uv and pre-commit packages are cached in `.tmp/local_ci_tmp/cache`
* uv's venv is located in `.tmp/local_ci_tmp/local_ci_workspace/.venv`
* By default the script will perform a `git clone` and checkout the latest commit. This requires the latest commit to be pushed.
* Alternately setting the environment variable `USE_HOST_GIT=1` the host's repo will be mounted inside the CI container, avoiding the need to commit/push changes. (Note: Doing so requires all git-lfs files to be checked out first).
* Fix escape sequences in `ci/scripts/gitutils.py`

Usage:
* Run the entire CI pipeline:
```bash
./ci/scripts/run_ci_local.sh all
```

* Run just the checks stage:
```bash
./ci/scripts/run_ci_local.sh checks
```

* Debug a CI issue with the `bash` pseudo-stage. This will perform a git clone & checkout, and then drop you in a bash shell with all of the CI variables set.
```bash
./ci/scripts/run_ci_local.sh bash
```


## By Submitting this PR I confirm:
- I am familiar with the [Contributing Guidelines](https://github.com/NVIDIA/AgentIQ/blob/develop/docs/source/advanced/contributing.md).
- We require that all contributors "sign-off" on their commits. This certifies that the contribution is your original work, or you have rights to submit it under the same license, or a compatible license.
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Authors:
  - David Gardner (https://github.com/dagardner-nv)

Approvers:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

URL: #59

…rConfig` to allow `None` (#76)

* Fixes an issue where the `str` type caused validation errors with the default `None` values.

Closes #58

## By Submitting this PR I confirm:
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Authors:
  - David Gardner (https://github.com/dagardner-nv)

Approvers:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

URL: #76

… (S3 bucket) (#71)

Workflow, profiling and evaluation results can be customized and uploaded using S3 credentials.
Sample Usage for customizing and uploading:
```
eval:
  general:
    output:
      dir: ./.tmp/aiq/examples/simple_output/
      # Whether to cleanup the output directory before running the workflow
      cleanup: true
      custom_scripts:
        convert_workflow_to_csv:
          script: examples/simple/src/aiq_simple/scripts/workflow_to_csv.py
          kwargs:
            input: ./.tmp/aiq/examples/simple_output/workflow_output.json
            output: ./.tmp/aiq/examples/simple_output/workflow.csv
      # Upload contents of output directory to remote storage using S3 credentials
      remote_dir: output
      s3:
        endpoint_url: http://10.185.X.X:9000
        bucket: aiq-simple-bucket
        access_key: fake-access-key
        secret_key: fake-secret-key
    dataset:
      _type: json
      # Download dataset from remote storage using S3 credentials
      remote_file_path: input/langsmith.json
      file_path: ./.tmp/aiq/examples/simple_input/langsmith.json
      s3:
        endpoint_url: http://10.185.X.X:9000
        bucket: aiq-simple-bucket
        access_key: fake-access-key
        secret_key: fake-access-key
```
Sample Output: 
```
2025-04-04 09:23:38,412 - aiq.profiler.profile_runner - INFO - Wrote combined data to: .tmp/aiq/examples/simple_output/all_requests_profiler_traces.json
2025-04-04 09:23:38,542 - aiq.profiler.profile_runner - INFO - Wrote merged standardized DataFrame to .tmp/aiq/examples/simple_output/standardized_data_all.csv
2025-04-04 09:23:38,819 - aiq.profiler.profile_runner - INFO - Wrote inference optimization results to: .tmp/aiq/examples/simple_output/inference_optimization.json███████████████████████████████████████████████████████████| 3/3 [00:07<00:00,  2.04s/it]
2025-04-04 09:23:39,825 - aiq.profiler.profile_runner - INFO - Nested stack analysis complete
2025-04-04 09:23:39,864 - aiq.profiler.profile_runner - INFO - Concurrency spike analysis complete
2025-04-04 09:23:39,865 - aiq.profiler.profile_runner - INFO - Wrote workflow profiling report to: .tmp/aiq/examples/simple_output/workflow_profiling_report.txt
2025-04-04 09:23:39,866 - aiq.profiler.profile_runner - INFO - Wrote workflow profiling metrics to: .tmp/aiq/examples/simple_output/workflow_profiling_metrics.json
2025-04-04 09:23:39,870 - aiq.eval.evaluate - INFO - Workflow output written to .tmp/aiq/examples/simple_output/workflow_output.json
2025-04-04 09:23:39,871 - aiq.eval.evaluate - INFO - Evaluation results written to .tmp/aiq/examples/simple_output/rag_relevance_output.json
2025-04-04 09:23:39,871 - aiq.eval.evaluate - INFO - Evaluation results written to .tmp/aiq/examples/simple_output/rag_groundedness_output.json
2025-04-04 09:23:39,872 - aiq.eval.evaluate - INFO - Evaluation results written to .tmp/aiq/examples/simple_output/rag_accuracy_output.json
2025-04-04 09:23:39,872 - aiq.eval.evaluate - INFO - Evaluation results written to .tmp/aiq/examples/simple_output/trajectory_accuracy_output.json
2025-04-04 09:23:39,872 - aiq.eval.utils.output_uploader - INFO - Running custom script: examples/simple/src/aiq_simple/scripts/workflow_to_csv.py examples/simple/src/aiq_simple/scripts/workflow_to_csv.py --input ./.tmp/aiq/examples/simple_output/workflow_output.json --output ./.tmp/aiq/examples/simple_output/workflow.csv
✅ Converted workflow_output.json to workflow.csv
2025-04-04 09:23:39,922 - aiq.eval.utils.output_uploader - INFO - Custom script examples/simple/src/aiq_simple/scripts/workflow_to_csv.py completed successfully.
Uploading files to S3:   0%|                                                                                                                                                                                                         | 0/12 [00:00<?, ?it/s]2025-04-04 09:23:40,492 - aiq.eval.utils.output_uploader - INFO - Uploaded .tmp/aiq/examples/simple_output/inference_optimization.json to s3://aiq-simple-bucket/output/inference_optimization.json
Uploading files to S3:   8%|████████████████                                                                                                                                                                                 | 1/12 [00:00<00:02,  3.94it/s]2025-04-04 09:23:40,518 - aiq.eval.utils.output_uploader - INFO - Uploaded .tmp/aiq/examples/simple_output/workflow_profiling_metrics.json to s3://aiq-simple-bucket/output/workflow_profiling_metrics.json
2025-04-04 09:23:40,518 - aiq.eval.utils.output_uploader - INFO - Uploaded .tmp/aiq/examples/simple_output/workflow.csv to s3://aiq-simple-bucket/output/workflow.csv
2025-04-04 09:23:40,520 - aiq.eval.utils.output_uploader - INFO - Uploaded .tmp/aiq/examples/simple_output/workflow_profiling_report.txt to s3://aiq-simple-bucket/output/workflow_profiling_report.txt
2025-04-04 09:23:40,600 - aiq.eval.utils.output_uploader - INFO - Uploaded .tmp/aiq/examples/simple_output/trajectory_accuracy_output.json to s3://aiq-simple-bucket/output/trajectory_accuracy_output.json
Uploading files to S3:  42%|████████████████████████████████████████████████████████████████████████████████▍                                                                                                                | 5/12 [00:00<00:00, 16.44it/s]2025-04-04 09:23:40,614 - aiq.eval.utils.output_uploader - INFO - Uploaded .tmp/aiq/examples/simple_output/rag_accuracy_output.json to s3://aiq-simple-bucket/output/rag_accuracy_output.json
2025-04-04 09:23:40,627 - aiq.eval.utils.output_uploader - INFO - Uploaded .tmp/aiq/examples/simple_output/rag_groundedness_output.json to s3://aiq-simple-bucket/output/rag_groundedness_output.json
2025-04-04 09:23:40,867 - aiq.eval.utils.output_uploader - INFO - Uploaded .tmp/aiq/examples/simple_output/rag_relevance_output.json to s3://aiq-simple-bucket/output/rag_relevance_output.json
Uploading files to S3:  67%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▋                                                                | 8/12 [00:00<00:00, 13.45it/s]2025-04-04 09:23:40,882 - aiq.eval.utils.output_uploader - INFO - Uploaded .tmp/aiq/examples/simple_output/gantt_chart.png to s3://aiq-simple-bucket/output/gantt_chart.png
2025-04-04 09:23:40,885 - aiq.eval.utils.output_uploader - INFO - Uploaded .tmp/aiq/examples/simple_output/standardized_data_all.csv to s3://aiq-simple-bucket/output/standardized_data_all.csv
2025-04-04 09:23:40,909 - aiq.eval.utils.output_uploader - INFO - Uploaded .tmp/aiq/examples/simple_output/workflow_output.json to s3://aiq-simple-bucket/output/workflow_output.json
2025-04-04 09:23:42,068 - aiq.eval.utils.output_uploader - INFO - Uploaded .tmp/aiq/examples/simple_output/all_requests_profiler_traces.json to s3://aiq-simple-bucket/output/all_requests_profiler_traces.json
Uploading files to S3: 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 12/12 [00:01<00:00,  6.55it/s]
```

Closes #65, #66 

## By Submitting this PR I confirm:
- I am familiar with the [Contributing Guidelines](https://github.com/NVIDIA/AgentIQ/blob/develop/docs/source/advanced/contributing.md).
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- When the PR is ready for review, new or existing tests cover these changes.
- When the PR is ready for review, the documentation is up to date with these changes.

Authors:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

Approvers:
  - Dhruv Nandakumar (https://github.com/dnandakumar-nv)

URL: #71

* Run the test CI stage on both Amd64 and Arm64.
* Document installing QEMU to run CI for Arm64 on an Amd64 system.
* Disable `examples/simple/tests/test_web_query_tool.py` test on Arm due to a known issue with Faiss #72

Requires #59 to be merged first

## By Submitting this PR I confirm:
- I am familiar with the [Contributing Guidelines](https://github.com/NVIDIA/AgentIQ/blob/develop/docs/source/advanced/contributing.md).
- We require that all contributors "sign-off" on their commits. This certifies that the contribution is your original work, or you have rights to submit it under the same license, or a compatible license.
  - Any contribution which contains commits that are not Signed-Off will not be accepted.
- When the PR is ready for review, new or existing tests cover these changes.
- When the PR is ready for review, the documentation is up to date with these changes.

Authors:
  - David Gardner (https://github.com/dagardner-nv)

Approvers:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

URL: #73

* This removes the need to repeat default config values in a YAML for the sole purpose allowing users to override the values with the `--override` flag.
* Remove unnecessary `assert` in `src/aiq/data_models/common.py` as this is actually already handled by the code, allowing users to prototype config classes directly in the interpreter.
* Add unittests for the `LayeredConfig` class.

Closes #83

## By Submitting this PR I confirm:
- I am familiar with the [Contributing Guidelines](https://github.com/NVIDIA/AgentIQ/blob/develop/docs/source/advanced/contributing.md).
- We require that all contributors "sign-off" on their commits. This certifies that the contribution is your original work, or you have rights to submit it under the same license, or a compatible license.
  - Any contribution which contains commits that are not Signed-Off will not be accepted.
- When the PR is ready for review, new or existing tests cover these changes.
- When the PR is ready for review, the documentation is up to date with these changes.

Authors:
  - David Gardner (https://github.com/dagardner-nv)

Approvers:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

URL: #85

Signed-off-by: David Gardner <dagardner@nvidia.com>

Closes -> #84

## By Submitting this PR I confirm:
- I am familiar with the [Contributing Guidelines](https://github.com/NVIDIA/AgentIQ/blob/develop/docs/source/advanced/contributing.md).
- We require that all contributors "sign-off" on their commits. This certifies that the contribution is your original work, or you have rights to submit it under the same license, or a compatible license.
  - Any contribution which contains commits that are not Signed-Off will not be accepted.
- When the PR is ready for review, new or existing tests cover these changes.
- When the PR is ready for review, the documentation is up to date with these changes.

Authors:
  - Eric Evans II (https://github.com/ericevans-nv)
  - David Gardner (https://github.com/dagardner-nv)

Approvers:
  - Michael Demoret (https://github.com/mdemoret-nv)

URL: #89

Changelog update


## By Submitting this PR I confirm:
- I am familiar with the [Contributing Guidelines](https://github.com/NVIDIA/AgentIQ/blob/develop/docs/source/advanced/contributing.md).
- We require that all contributors "sign-off" on their commits. This certifies that the contribution is your original work, or you have rights to submit it under the same license, or a compatible license.
  - Any contribution which contains commits that are not Signed-Off will not be accepted.
- When the PR is ready for review, new or existing tests cover these changes.
- When the PR is ready for review, the documentation is up to date with these changes.

Authors:
  - Anuradha Karuppiah (https://github.com/AnuradhaKaruppiah)

Approvers:
  - Michael Demoret (https://github.com/mdemoret-nv)

URL: #90